Pinned Repositories
chimera_alignment_conservation
Tutorial on alignment of evolutionarily related alphafold database predictions and coloring by conservation.
colabfold_interactome
Workflow/tutorial for colabfold interactome virtual screening.
FLIM_tools
Python tools for linear unmixing and phasor analysis of FLIM data.
flowcytetools
Python tools to read, write, compensate, and gate flow cytometry files. This version has minimal complex dependencies.
imagej.github.io
The ImageJ wiki
Jay_pdbtools
A collection of python tools to read pdb (protein data bank) structure files into a pandas data frame and perform calculations on them.
Jay_Plugins
ImageJ plugins from Jay
Jay_qPCR
Automation and analysis tools for qPCR testing
napari_jroitools
Napari plugins for reading and writing ImageJ roi files and creating image profiles.
pysimfcs
Python simulation and analysis tools for fluorescence correlation spectroscopy and flavors thereof.
jayunruh's Repositories
jayunruh/napari_jroitools
Napari plugins for reading and writing ImageJ roi files and creating image profiles.
jayunruh/Jay_Plugins
ImageJ plugins from Jay
jayunruh/Jay_qPCR
Automation and analysis tools for qPCR testing
jayunruh/FLIM_tools
Python tools for linear unmixing and phasor analysis of FLIM data.
jayunruh/Jay_pdbtools
A collection of python tools to read pdb (protein data bank) structure files into a pandas data frame and perform calculations on them.
jayunruh/colabfold_interactome
Workflow/tutorial for colabfold interactome virtual screening.
jayunruh/flowcytetools
Python tools to read, write, compensate, and gate flow cytometry files. This version has minimal complex dependencies.
jayunruh/imagej.github.io
The ImageJ wiki
jayunruh/Jay_Plugins2
second plugins package
jayunruh/Jay_Plugins3
Third plugins package
jayunruh/Jay_Serology
Python code for ELISA absorbance serology analysis.
jayunruh/list-of-update-sites
The update sites ImageJ knows about automatically
jayunruh/macros
some macros
jayunruh/napari-ip-workflow
Basic pre-processing/segmentation/measurement workflow for napari.
jayunruh/napari_jflowcyte
Tools to import, export, compensate, and gate (using Napari) flow cytometry files.
jayunruh/Nucleolar_Segmentation_Normality
Python version of tools to segment nucleoli and measure the enrichment of signals in them or Normality.
jayunruh/python_introDS_course
Intro to python for data science using Pandas and Jupyter Notebooks
jayunruh/python_IP_course
Basic image processing course in python
jayunruh/SIMR_ontology
Controlled Vocabulary used at SIMR