jbelyeu

Senior Bioinformatics Scientist at PacBio

PacBioSalt Lake City, UT

Pinned Repositories

11lab360
Javascript multiple processes lab
Language:JavaScript0 2 00
dnSV-manuscript
scripts and data to replicate an analysis of de novo structural variation in CEPH-Utah and SFARI SSC cohorts
Language:Jupyter Notebook4 2 00
ggd-recipes
conda recipes for genomic data
Language:Shell0 2 00
NAHRly
Genomic copy-number variant calling on NAHR-based events
Language:Python1 2 22
PlotCritic
Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gigascience/article/7/7/giy064/5026174
Language:Shell11 2 383
samplot
Plot structural variant signal from a BAM/CRAM
Language:Python6 1 271
SV-plaudit
Pipeline for structural variant image curation and analysis.
Language:Shell48 6 242
unfazed
Unfazed by genomic variant phasing
Language:Python26 4 30

jbelyeu's Repositories

jbelyeu/SV-plaudit
Pipeline for structural variant image curation and analysis.
Language:Shell48 6 242
jbelyeu/unfazed
Unfazed by genomic variant phasing
Language:Python26 4 30
jbelyeu/PlotCritic
Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gigascience/article/7/7/giy064/5026174
Language:Shell11 2 383
jbelyeu/samplot
Plot structural variant signal from a BAM/CRAM
Language:Python6 1 271
jbelyeu/dnSV-manuscript
scripts and data to replicate an analysis of de novo structural variation in CEPH-Utah and SFARI SSC cohorts
Language:Jupyter Notebook4 2 00
jbelyeu/NAHRly
Genomic copy-number variant calling on NAHR-based events
Language:Python1 2 22
jbelyeu/ggd-recipes
conda recipes for genomic data
Language:Shell0 2 00
jbelyeu/312Lab7TSP
TSP algorithm by B&B for CS 312
Language:C#2 0
jbelyeu/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0
jbelyeu/codingskilz
little projects for practicing coding skills
Language:Python2 0
jbelyeu/CS312
Programming projects in C# from CS 312 (BYU Spring Term 2015)
Language:C#2 0
jbelyeu/cshl2018-sv-review
materials for CSHL advanced sequencing course 2018
Language:Shell3 0
jbelyeu/ctseq
Pipeline to analyze ctDNA data
Language:Python1 0
jbelyeu/graphite_rotation_project
Version of Graphite with added code to output a path through a single graph and the reads that map to it
Language:C++2 0
jbelyeu/jbelyeu.github.io
Github pages personal website
Language:JavaScript2 0
jbelyeu/mechanizer
python script to analyze the most likely mutational mechanism of a given structural variant
Language:Python2 0
jbelyeu/MvnIgnite
Trial code for learning Ignite
Language:Java2 0
jbelyeu/mySelecT
A genome-wide study of evolution
Language:Java5 0
jbelyeu/old_class_code
Code from CS class projects in C++, Java, and C#, mostly.
Language:HTML2 0
jbelyeu/samplot-ml
Language:Shell1 0
jbelyeu/samplot_manuscript
example data and commands for the figures in the samplot manuscript
Language:Shell2 0
jbelyeu/SelecT
Java version of CMS (Author is Hayden Smith, I'm helping with finishing touches)
Language:Java3 0
jbelyeu/slivar
variant expressions, annotation, and filtering for great good.
Language:Nim2 0
jbelyeu/SoftwareDictionary
Tools for bioinformatics (including some unix tools from outside the field) as I think of/find them
2 0
jbelyeu/sv_calling_nf
Nextflow scripts for structural variant calling
Language:Nextflow2 0
jbelyeu/TRF
Tandem Repeats Finder: a program to analyze DNA sequences
Language:C0 0
jbelyeu/waterFluxScripts
Scripts (written by Brandon Pickett) for statistical analysis of water flux data
Language:Python3 0
jbelyeu/wham
Structural variant detection and association testing
Language:C++1 0
jbelyeu/WorkingIgnite
Working maven ignite project
Language:Java2 0
jbelyeu/XPRESSpipe
An alignment and analysis pipeline for RNAseq data
Language:Python1 0