Welcome to the 2021 QB Bootcamp of the School for Biological Sciences at Cold Spring Harbor Laboratory! This Github repository contains the Jupyter notebooks, shell scripts, and datasets that we will work through in this bootcamp.
Repository URL: https://github.com/jbkinney/21_qbbootcamp
Lead Instructor:
- Justin Kinney (jkinney@cshl.edu), Associate Professor
Schedule:
- Day 1: Wednesday, September 1, Hershey East (Hershey Building), 10am - 4pm
- Day 2: Thursday, September 2, Hershey East (Hershey Building), 10am - 5pm
- Day 3: Friday, September 3, Hershey East (Hershey Building), 2pm - 5pm
Students are asked to install the Anaconda distribution of Python 3.8, on their own computers. This is available at https://www.anaconda.com/products/individual.
To log into the Elzar cluster, execute this at your command line:
ssh [user]@bamdev2.cshl.edu
where [user] is your CSHL username (e.g. mine is jkinney). Then enter your CSHL password.
To download elzar_exercise.tar.gz to Elzar, execute:
wget --no-check-certificate "https://github.com/jbkinney/21_qbbootcamp/raw/master/elzar_exercise.tar.gz"
Then to unpack, execute:
tar -zxvf elzar_exercise.tar.gz