jbloomlab/seqneut-pipeline

Issues

• plate-level manual drops with 'wells' causes assertion error

  #45 opened 8 months ago by ckikawa
  4

• Adding code for processing read 1, plate based indexing

  #40 opened 9 months ago by anloes
  5

• reasonable suggestions for `fixslope` range for example / docs

  #36 opened 9 months ago by jbloom
  2

• allow plates and sera to be categorized into groups

  #31 opened 9 months ago by jbloom
  2

• Include a mechanism to indicate that titers that are estimated to be out of bounds in summary plots

  #30 opened 9 months ago by anloes
  1

• improve goodness of fit assessments

  #33 opened 9 months ago by jbloom
  1

• enable constraints on parameter ranges

  #32 opened 9 months ago by jbloom
  1

• Add mechanism to drop single serum sample from a given plate

  #15 opened a year ago by anloes
  1

• add `miscellaneous_plates` to configuration YAML

  #26 opened a year ago by jbloom
  0

• update dms_variants version

  #24 opened a year ago by ckikawa
  1

• handle QC of sera

  #14 opened a year ago by jbloom
  2

• The data which indicates that samples should be removed due to QC issues is removed when filtering is done from the config.yml

  #16 opened a year ago by anloes
  1

• Max fraction infectivity filter and barcode fraction consistency filter should be moved from plate QC to curve fitting QC

  #17 opened a year ago by anloes
  1

• make *well* a mandatory column in samples CSVs and enable it to be used to drop samples

  #1 opened a year ago by jbloom
  8