jcabraham
Software and data engineer with more than 15 years experience in oncology genomics and biomarker discovery.
Vertex PharmaceuticalsBoston, MA USA
Pinned Repositories
abacus-demo
activejdbc-gradle-plugin
Gradle plugin for instrumenting ActiveJDBC model classes.
arethusa
Arethusa: Annotation Environment
aws
Easy command line access to Amazon EC2, S3, SQS, ELB, and SDB
big-data-madison-dagster
Data-Science-For-Beginners
10 Weeks, 20 Lessons, Data Science for All!
deming2018
Presentation for Deming Conference in December 2018
emacs24-starter-kit
A cleaner version of the literate starter kit based on Emacs24
jcabraham's Repositories
jcabraham/abacus-demo
jcabraham/activejdbc-gradle-plugin
Gradle plugin for instrumenting ActiveJDBC model classes.
jcabraham/arethusa
Arethusa: Annotation Environment
jcabraham/aws
Easy command line access to Amazon EC2, S3, SQS, ELB, and SDB
jcabraham/big-data-madison-dagster
jcabraham/Data-Science-For-Beginners
10 Weeks, 20 Lessons, Data Science for All!
jcabraham/deming2018
Presentation for Deming Conference in December 2018
jcabraham/emacs24-starter-kit
A cleaner version of the literate starter kit based on Emacs24
jcabraham/empirical-bayes-book
Introduction to Empirical Bayes: Examples from Baseball Statistics
jcabraham/express-s3-router
A RESTful API for AWS S3 using Express
jcabraham/flintrock
A command-line tool for launching Apache Spark clusters.
jcabraham/fqgrep
An approximate sequence pattern matcher for FASTQ/FASTA files.
jcabraham/logeion-plautus
Scripts for mapping line numbers for Plautus plays to Logeion references.
jcabraham/ML_for_Hackers
Code accompanying the book "Machine Learning for Hackers"
jcabraham/MLOps
MLOps template with examples for Data pipelines, ML workflow management, API development and Monitoring.
jcabraham/nf-training-advanced
Customer workshop materials
jcabraham/Novel-Devotions
Andrew Piper's "Novel Devotions" (looking at Augustine's Confessions)
jcabraham/orchid
A novel management, annotation, and machine learning framework for analyzing cancer mutations
jcabraham/passwordless-postgrestore
PostgreSQL TokenStore for Passwordless
jcabraham/patterns
A curated collections of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html
jcabraham/powerline
emacs powerline
jcabraham/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
jcabraham/pyunicorn
Unified Complex Network and Recurrence Analysis Toolbox
jcabraham/rds_secret_rotation
Manage RDS Secret using AWS Secret Manager
jcabraham/slick-codegen-example
jcabraham/stitchr
(Data)Stitchr -- tools for data processing and manipulation, based on Spark
jcabraham/terraform-aws-rds-secret-rotation
jcabraham/verify-s3-checksums
jcabraham/yawsso
Yet Another AWS SSO - sync up AWS CLI v2 SSO login session to legacy CLI v1 credentials