Pinned Repositories
jchorl's Repositories
jchorl/sendfiles
jchorl/website
Personal website
jchorl/aws-vault
A vault for securely storing and accessing AWS credentials in development environments
jchorl/bazel
a fast, scalable, multi-language and extensible build system
jchorl/bazel-remote
A remote cache for Bazel
jchorl/botocore
The low-level, core functionality of boto 3.
jchorl/built
Provides a crate with information from the time it was built.
jchorl/CodeNarc
CodeNarc source
jchorl/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
jchorl/go-gitlab
GitLab Go SDK
jchorl/goofys
a high-performance, POSIX-ish Amazon S3 file system written in Go
jchorl/hicap
👋🎓 in silico typing of the H. influenzae cap locus
jchorl/kraken2
The second version of the Kraken taxonomic sequence classification system
jchorl/mamba
The Fast Cross-Platform Package Manager
jchorl/METAMVGL
METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs
jchorl/minio-go
MinIO Go client SDK for S3 compatible object storage
jchorl/mob-suite
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
jchorl/mountpoint-s3
A simple, high-throughput file client for mounting an Amazon S3 bucket as a local file system.
jchorl/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
jchorl/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
jchorl/nanoget
Functions to extract information from Oxford Nanopore sequencing data and alignments
jchorl/nanotest
Small test datasets for testing nanopack scripts and modules
jchorl/nextflow
A DSL for data-driven computational pipelines
jchorl/nf-fus3
jchorl/pip
The Python package installer
jchorl/pydantic-to-typescript
CLI Tool for converting pydantic models into typescript definitions
jchorl/rules_oci
Bazel rules for building OCI containers
jchorl/rules_pigz
jchorl/terraform-provider-aws
Terraform AWS provider
jchorl/VirBot
VirBot: a protein-based RNA virus detector for metagenomic data