jclachance
PhD candidate, Bioinformatics, Université de Sherbrooke. My research focuses on the Systems Biology of minimal cells.
Ginkgo BioworksBoston
Pinned Repositories
bigg_models_data
The flat files for the BiGG Models website
BiGMeC
BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
biopython
Official git repository for Biopython (converted from CVS)
BOFdat
Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
build_model
Example model reconstruction and analysis scripts
COGfinder
Python package to find the Cluster of Orthologous Groups (COG) categories for every gene in a fasta files(s)
cookiecutter-memote
A cookiecuttter template for memote model repositories
escher
Build, view, share, and embed pathway maps.
etfl
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
iJL208
The metabolic model for Mesoplasma florum and the code to make it work
jclachance's Repositories
jclachance/BOFdat
Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
jclachance/iJL208
The metabolic model for Mesoplasma florum and the code to make it work
jclachance/biopython
Official git repository for Biopython (converted from CVS)
jclachance/bigg_models_data
The flat files for the BiGG Models website
jclachance/BiGMeC
BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
jclachance/build_model
Example model reconstruction and analysis scripts
jclachance/COGfinder
Python package to find the Cluster of Orthologous Groups (COG) categories for every gene in a fasta files(s)
jclachance/cookiecutter-memote
A cookiecuttter template for memote model repositories
jclachance/escher
Build, view, share, and embed pathway maps.
jclachance/etfl
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
jclachance/MinimalGenome
MinGenome: An in silico top-down approach for the synthesis of minimized genomes.
jclachance/oxidizeme
OxidizeME model and notebooks
jclachance/pgap
NCBI Prokaryotic Genome Annotation Pipeline
jclachance/pytfa
A Python 3 implementation of Thermodynamics-based Flux Analysis
jclachance/solvemepy
solveME public repository
jclachance/y-ome
A workflow to define the Y-ome for E. coli K-12 MG1655
jclachance/yeast-GEM
The consensus GEM for Saccharomyces cerevisiae
jclachance/yetfl