Pinned Repositories
pyplexity
veryfasttree
Efficient phylogenetic tree inference for massive taxonomic datasets
SparkBWA
SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the most widely adopted sequence aligner, the Burrows-Wheeler Aligner (BWA).
BigSeqKit
BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
BigBWA
BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).
pastaspark
PASTASpark is an extension to PASTA (Practical Alignments using SATé and TrAnsitivity) that allows to execute it on a distributed memory cluster making use of Apache Spark.
perldoop
Efficient Execution of Perl Scripts on Hadoop Clusters
mpi4all
MPI4All: Universal Binding Generation for MPI Parallel Programming
continuation
Experimental continuation implementation
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