Pinned Repositories
binless
Resolution-independent normalization of Hi-C data
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
bootcamp
Biocore bootcamp
bsub
Send R code/R scripts/shell commands to LSF cluster without leaving R
chromosight
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
cooler_genes
A cool place to store your Hi-C
docker-4dn-hic
Docker for 4DN Hi-C processing pipeline
docker-4dn-RE-checker
jctourtellotte's Repositories
jctourtellotte/binless
Resolution-independent normalization of Hi-C data
jctourtellotte/bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
jctourtellotte/bootcamp
Biocore bootcamp
jctourtellotte/bsub
Send R code/R scripts/shell commands to LSF cluster without leaving R
jctourtellotte/chromosight
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
jctourtellotte/conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
jctourtellotte/cooler_genes
A cool place to store your Hi-C
jctourtellotte/docker-4dn-hic
Docker for 4DN Hi-C processing pipeline
jctourtellotte/docker-4dn-RE-checker
jctourtellotte/E_coli_analysis
Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nucleoid- associated proteins and the condensin MukBEF)
jctourtellotte/hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
jctourtellotte/pairtools
CLI tools to process mapped Hi-C data
jctourtellotte/pyflow-ChIPseq
a snakemake pipeline to process ChIP-seq files from GEO or in-house
jctourtellotte/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
jctourtellotte/taylor-swift-tour
The Eras Tour told by numbers