jczech/ingest-core

Core ingest service components, including minimal metadata representation and caching

ingest-core

Core ingest service components, including minimal metadata representation and caching

Dependencies for Ubuntu 16.04

• Update Ubuntu first
  • sudo apt-get update
• Install Java JDK and Gradle
  • sudo apt-get install openjdk-8-jdk
  • sudo apt-get install gradle
• Install RabbitMQ
  • wget https://github.com/rabbitmq/rabbitmq-server/releases/download/rabbitmq_v3_6_12/rabbitmq-server_3.6.12-1_all.deb
  • sudo dpkg -i rabbitmq-server_3.6.12-1_all.deb
  • sudo apt-get install -f
  • sudo service rabbitmq-server start
• Install MongoDB
  • sudo apt-key adv --keyserver hkp://keyserver.ubuntu.com:80 --recv 0C49F3730359A14518585931BC711F9BA15703C6
  • echo "deb [ arch=amd64,arm64 ] http://repo.mongodb.org/apt/ubuntu xenial/mongodb-org/3.4 multiverse" | sudo tee /etc/apt/sources.list.d/mongodb-org-3.4.list
  • sudo apt-get update
  • sudo apt-get install -y mongodb-org
  • sudo service mongod start
• If Mongo connection is refused
  • sudo rm /var/lib/mongodb/mongod.lock
  • sudo mongod --repair
  • sudo service mongod start

How to Build and Run

• ./gradlew build
• java -jar ./build/libs/ingest-core-0.0.1-SNAPSHOT.jar

How to Test

• You can follow many of the examples listed in docs/ingest-api-walkthrough.md, but substitute http://api.ingest.dev.data.humancellatlas.org/ with 127.0.0.1:8080
  • For instance, with step one in that document, you can run the following command: curl -X GET 127.0.0.1:8080
  • Or for example two: curl -X POST -H "Content-Type: application/json" 127.0.0.1:8080/submissionEnvelopes -d {}