Pinned Repositories
abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
bioinformatics_work
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
mlst
:id: Scan contig files against PubMLST typing schemes
PIRATE
A toolbox for pangenome analysis and threshold evaluation.
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
RaGOO
Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Roary
Rapid large-scale prokaryote pan genome analysis
spades
SPAdes Genome Assembler
vapor
jdalsdurf's Repositories
jdalsdurf/bioinformatics_work
jdalsdurf/abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
jdalsdurf/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
jdalsdurf/mlst
:id: Scan contig files against PubMLST typing schemes
jdalsdurf/PIRATE
A toolbox for pangenome analysis and threshold evaluation.
jdalsdurf/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
jdalsdurf/RaGOO
Fast Reference-Guided Scaffolding of Genome Assembly Contigs
jdalsdurf/Roary
Rapid large-scale prokaryote pan genome analysis
jdalsdurf/spades
SPAdes Genome Assembler
jdalsdurf/vapor
jdalsdurf/bacti_workflows
repo for bacti tools
jdalsdurf/ibv_workflows
repo for IBV tools
jdalsdurf/seqtk
Toolkit for processing sequences in FASTA/Q formats
jdalsdurf/ssuis_pipeline
pipeline and general workflow for ssuis analysis
jdalsdurf/tormes
Making whole genome bacterial sequencing data analysis easy
jdalsdurf/Trycycler
A tool for generating consensus long-read assemblies for bacterial genomes