Pinned Repositories
DeepRibo
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
DeepRibo
DNA-transformer
h5max
TIS_transformer_outdated
Transformer model for TIS annotation
RiboTIE
Scripts and instructions to apply RiboTIE on Ribo-seq data
RiboTIE_article
Scripts run to produce the RIBO-former paper
TIS_transformer
transcript_transformer
jdcla's Repositories
jdcla/DNA-transformer
jdcla/TIS_transformer_outdated
Transformer model for TIS annotation
jdcla/TIS_transformer
Old repository for TIS_transformer
jdcla/h5max
jdcla/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
jdcla/DeepRibo
jdcla/prompred
jdcla/bio-attention
PyTorch implementation of 2D sliding window attention
jdcla/boinq2
(in progress) JHipster based boinq edition
jdcla/DS-python-data-analysis
Data manipulation, analysis and visualisation in Python - specialist course Doctoral schools of Ghent University
jdcla/flasky
Companion code to my O'Reilly book "Flask Web Development".
jdcla/gtfparse
Parsing tools for GTF (gene transfer format) files
jdcla/h5torch
HDF data utilities for PyTorch
jdcla/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
jdcla/jannovar
Java library for annotating VCF files with gene/transcript-based annotations
jdcla/jbrowse
A modern genome browser built with JavaScript and HTML5.
jdcla/local-attention
An implementation of local windowed attention for language modeling
jdcla/mQC
Ribosome profiling mapping quality control tool
jdcla/neural_cake
cakes and neural networks
jdcla/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
jdcla/pclab_CNN
pclab
jdcla/plastid
Position-wise analysis of sequencing and genomics data
jdcla/presentations
jdcla/prompred_goes_NN
jdcla/prompred_outdated
Promoter Predictor
jdcla/PromPred_WebApp
Web application for PromPred
jdcla/timeseries
jdcla/tis_streamlit
streamlit app for TIS transformer
jdcla/ympd
Standalone MPD Web GUI written in C, utilizing Websockets and Bootstrap/JS