Pinned Repositories
ansible-playbooks
Repo for ansible playbooks
ascat
ASCAT copy number R package
ASE_analysis
Tools for analysis of Allele Specific Expression in T-ALL and AML
battenberg
Battenberg R package for subclonal copynumber estimation
Dockerfiles
Repo containing docker files forming the base of various pipelines
HomDels
InfiniteSites
Simulator and analysis of Infinite Sites Assumption breakdown
nanowgs
Nextflow pipeline for Nanopore WGS analysis
souporcell
Clustering scRNAseq by genotypes
jdemeul's Repositories
jdemeul/nanowgs
Nextflow pipeline for Nanopore WGS analysis
jdemeul/HomDels
jdemeul/InfiniteSites
Simulator and analysis of Infinite Sites Assumption breakdown
jdemeul/ASE_analysis
Tools for analysis of Allele Specific Expression in T-ALL and AML
jdemeul/Dockerfiles
Repo containing docker files forming the base of various pipelines
jdemeul/souporcell
Clustering scRNAseq by genotypes
jdemeul/ansible-playbooks
Repo for ansible playbooks
jdemeul/ascat
ASCAT copy number R package
jdemeul/battenberg
Battenberg R package for subclonal copynumber estimation
jdemeul/BLR
jdemeul/dl_sandbox
jdemeul/easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
jdemeul/easybuild-easyconfigs-devel
Development repo for new EasyBuild easyconfigs
jdemeul/elasticluster
Create clusters of VMs on the cloud and configure them with Ansible.
jdemeul/gc-replication_correct
Correcting for replication timing effects in LogR
jdemeul/hapdup
Pipeline to convert a haploid assembly into diploid
jdemeul/kataegis
Tools for identifying and timing kataegis events in PCAWG data
jdemeul/MutationTime.R
An R script to time somatic mutations
jdemeul/PCAWG-Docker-Test
Scripts to help test Dockstore tools for PCAWG
jdemeul/smMIP-tools
jdemeul/TransmissibleCancerTools
jdemeul/wf-single-cell
jdemeul/wfa2tenx