jdime
Computational biologist. Genomics, single cell biology, network theory. Head of Data Science at Phenomic AI (Toronto, Canada).
Phenomic AIToronto, Canada
Pinned Repositories
AICamp_MLInPython
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
BFG_GI_ConditionDependent
Script to generate a matrix of condition-dependent networks and barplots (Figure 3C of Diaz-Mejia 2018)
BFG_GI_stats
Updated statistical analysis of genetic interactions mapped using Barcode Fusion Genetics
CBW_2021_CAN_M7
Canadian Bioinformatics Workshops 2021 - Cancer Analysis (CAN), Module 7 - single cell RNA
crescent
The CanceR Single Cell ExpressioN Toolkit one-line-command applications.
scRepertoire
A toolkit for single-cell immune profiling
scRNAseq_cell_cluster_labeling
Scripts to run and benchmark scRNA-seq cell cluster labeling methods
seurat
R toolkit for single cell genomics
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
jdime's Repositories
jdime/scRNAseq_cell_cluster_labeling
Scripts to run and benchmark scRNA-seq cell cluster labeling methods
jdime/CBW_2021_CAN_M7
Canadian Bioinformatics Workshops 2021 - Cancer Analysis (CAN), Module 7 - single cell RNA
jdime/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
jdime/BFG_GI_ConditionDependent
Script to generate a matrix of condition-dependent networks and barplots (Figure 3C of Diaz-Mejia 2018)
jdime/BFG_GI_stats
Updated statistical analysis of genetic interactions mapped using Barcode Fusion Genetics
jdime/crescent
The CanceR Single Cell ExpressioN Toolkit one-line-command applications.
jdime/AICamp_MLInPython
jdime/scRepertoire
A toolkit for single-cell immune profiling