Pinned Repositories
csd
Matlab demonstration version of constrained spherical deconvolution
git_collate_contributions
analyse contributions to a git repo, and produce a breakdown of commits, insertions and deletions per user
jdtournier.github.io
a brief tutorial for users new to Unix
mrdegibbs3D
mrtrix-0.2
This is the legacy version of MRtrix. This version will only get updates for critical bug fixes. For any new developments, please use the newer MRtrix3 codebase.
mrtrix3
MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
vu-meter
a simple mic level meter - useful to double-check mic levels when recording lectures!
mrtrix3
MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
jdtournier's Repositories
jdtournier/csd
Matlab demonstration version of constrained spherical deconvolution
jdtournier/mrdegibbs3D
jdtournier/vu-meter
a simple mic level meter - useful to double-check mic levels when recording lectures!
jdtournier/git_collate_contributions
analyse contributions to a git repo, and produce a breakdown of commits, insertions and deletions per user
jdtournier/jdtournier.github.io
a brief tutorial for users new to Unix
jdtournier/mrtrix-0.2
This is the legacy version of MRtrix. This version will only get updates for critical bug fixes. For any new developments, please use the newer MRtrix3 codebase.
jdtournier/mrtrix3
MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
jdtournier/terminal_graphics
simple single-file, header-only functionality to render images and plot data to terminal using sixels
jdtournier/dHCP-release-notes
Notes for the dHCP data release
jdtournier/dStripe
This repository contains code and model weights for the method described in the paper "dStripe: slice artefact correction in diffusion MRI via constrained neural network" https://doi.org/10.1016/j.media.2021.102255
jdtournier/fixel_combat
This performs ComBat data harmonisation on fixel-based data.
jdtournier/gmem
Simple tool to graph memory usage in terminal
jdtournier/MedPhysStatsCourse
Materials for the MedPhys Stats course
jdtournier/microstructure_simulations
Matlab code to run simple simulations of diffusion in cylinders - for demonstration purposes only
jdtournier/mrhub
Hub for open-source MR-related software
jdtournier/MRtrix3.github.io
Repository to hold the MRtrix3 website
jdtournier/mrtrix3_extras
A few odd but potentially useful commands
jdtournier/neonatal_acquisition_optimisation
Scripts used in optimisation of neonatal dMRI acquisition parameters
jdtournier/OOP-marp
jdtournier/OOP-slides
Slides for Object-Oriented Programming course
jdtournier/OOP_tutorial
jdtournier/pipeline_scripting
A collection of bash helper functions to help with scripting neuroimaging pipelines
jdtournier/PythonIntroGUI
jdtournier/remark
A simple, in-browser, markdown-driven slideshow tool.
jdtournier/rosenbrock
Experimenting with the Rosenbrock function and displaying using terminal_graphics repo
jdtournier/shard-recon
MRtrix3 module for motion correction and scattered slice reconstruction in multi-shell diffusion MRI.
jdtournier/simple_build
simple bash script to automatically build small C++ projects
jdtournier/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
jdtournier/vulkan_minimal_compute
Minimal Example of Using Vulkan for Compute Operations. Only ~400LOC.
jdtournier/wezterm
A GPU-accelerated cross-platform terminal emulator and multiplexer written by @wez and implemented in Rust