jeeberhardt
Post-doc at the Biozentrum (unibas) in computational chemistry. My favorite PyMOL colors are tv_green and skyblue.
Swiss Institute of Bioinformatics (SIB)Basel
Pinned Repositories
AutoDock-Vina
AutoDock Vina
bootstrap_rmsf
General recipe to compute the bootstrap RMSF from MD simulations
crypto1
CRYPTO1 Mifare classic
DCAshund
Long on strategy, short on complexity, your new loyal and compact DCA companion.
Meeko
A new Python package to prepare small molecules for docking.
mobius
A python package for peptide optimization using Bayesian optimization
OpenBPMD
reweight
Reimplementation of aMD reweighting protocol
unrolr
Unrolr: structural analysis of protein conformations using Stochastic Proximity Embedding
visualize
Visualization and exploration of MD trajectories using Bokeh and PyMOL
jeeberhardt's Repositories
jeeberhardt/crypto1
CRYPTO1 Mifare classic
jeeberhardt/AutoDock-Vina
AutoDock Vina
jeeberhardt/unrolr
Unrolr: structural analysis of protein conformations using Stochastic Proximity Embedding
jeeberhardt/bootstrap_rmsf
General recipe to compute the bootstrap RMSF from MD simulations
jeeberhardt/Meeko
A new Python package to prepare small molecules for docking.
jeeberhardt/mobius
A python package for peptide optimization using Bayesian optimization
jeeberhardt/OpenBPMD
jeeberhardt/reweight
Reimplementation of aMD reweighting protocol
jeeberhardt/visualize
Visualization and exploration of MD trajectories using Bokeh and PyMOL
jeeberhardt/DCAshund
Long on strategy, short on complexity, your new loyal and compact DCA companion.
jeeberhardt/shift
Yet another wrapper around SHIFTX+ for MD trajectories analysis but using MPI and HDF5