Pinned Repositories
gander
The "Git ANnex DedupER" deduplicates files and folders using git-annex.
gitit
A wiki using HAppS, pandoc, and git
horcrux
immortality for your encrypted backups
nix-no-root
Empowered Nix/Guix without root
ortholang
Short, reproducible phylogenomic cuts
ortholang-demo
Interactive web demo + tutorial for OrthoLang.
pges2019
Code for the Plant Genome Engineering Symposium website.
jefdaj's Repositories
jefdaj/horcrux
immortality for your encrypted backups
jefdaj/gander
The "Git ANnex DedupER" deduplicates files and folders using git-annex.
jefdaj/gitit
A wiki using HAppS, pandoc, and git
jefdaj/ortholang
Short, reproducible phylogenomic cuts
jefdaj/ortholang-demo
Interactive web demo + tutorial for OrthoLang.
jefdaj/blastdbget-nix
Download Blast databases from ftp.ncbi.nlm.nih.gov/blast/db, validate, and extract.
jefdaj/cdhit-nix
Automatically exported from code.google.com/p/cdhit
jefdaj/crb-blast-nix
Conditional Reciprocal Best Blast
jefdaj/cryptoisland
jefdaj/diamond-nix
Accelerated BLAST compatible local sequence aligner.
jefdaj/docopt.hs
A command-line interface description language and parser that will make you smile
jefdaj/easel-nix
Sequence analysis library used by Eddy/Rivas lab code
jefdaj/electionguard-client-hs
A Haskell client for Microsofts Electionguard Web API.
jefdaj/hmmer-nix
HMMER: biological sequence analysis using profile HMMs
jefdaj/inparanoid-nix
nix-build for the old InParanoid
jefdaj/jupyterwith-ortholang
declarative and reproducible Jupyter environments - powered by Nix
jefdaj/justorthologs-nix
jefdaj/logging
jefdaj/lotter
Lotter is a command-line tool that works with trade data in ledger-cli format.
jefdaj/mcl-nix
jefdaj/mmseqs2-nix
MMseqs2: ultra fast and sensitive search and clustering suite
jefdaj/muscle-nix
jefdaj/ncbi-blast-nix
jefdaj/nixpkgs
Nix Packages collection
jefdaj/orthofinder-nix
Phylogenetic orthology inference for comparative genomics
jefdaj/ortholang-jupyter-kernel
A Jupyter kernel for OrthoLang.
jefdaj/ortholang-notebooks
Reproducible OrthoLang example notebooks
jefdaj/psiblast-exb-nix
PSI-BLAST with a new sequence weighting algorithm
jefdaj/raxml-nix
jefdaj/treecl-nix
Clustering phylogenetic trees with python