jeffduda
Research Scientist at the Penn Image Computing & Science Laboratory
Penn Image Computing and Science LaboratoryPhiladelphia, PA
Pinned Repositories
AInSights-IDP
List of image derived phenotypes for AInSights
aries-app
Streamlined python-based version of ARIES
DANTsR
Rhythm is a ..
GetYourBrainPipelined
Example scripts for setting up a brain processing pipeline
GitWritingJeff
Repository for collaborative writing
NeuroBattery
Using ANTs to process multiple MR image types for a single subject
PetiOld
Experimental tools for quantifying structural and functional connectivity via medical images
Petiole
ITK Module for graph analysis of networks
picslpy
python tools for various medical image analysis operations
StructConnRepro
Neuroinformatics Technical Report: Reproducibility of graph metrics of human brain structural networks
jeffduda's Repositories
jeffduda/aries-app
Streamlined python-based version of ARIES
jeffduda/DANTsR
Rhythm is a ..
jeffduda/GetYourBrainPipelined
Example scripts for setting up a brain processing pipeline
jeffduda/picslpy
python tools for various medical image analysis operations
jeffduda/AInSights-IDP
List of image derived phenotypes for AInSights
jeffduda/ANTsPy
Advanced Normalization Tools in Python
jeffduda/ANTsR
Advanced Normalization Tools in R
jeffduda/picsl-gh-pipelines
pipelines for medical image analysis
jeffduda/TBI-Long
jeffduda/antsCtLungRegistrationWithTotalSegmentator
Register inspiration and expiration lung CT using lung segmentations from TotalSegmentator
jeffduda/ANTsRCore
C++ core supporting ANTsR.
jeffduda/circosr-brain
Call circos from R to create connectograms from brain data
jeffduda/dcmpicsl
Tools to simplify processing of dicom images
jeffduda/dcmqi
dcmqi (DICOM for Quantitative Imaging) is a free, open source library that can help with the conversion between imaging research formats and the standard DICOM representation for image analysis results
jeffduda/dcmtk
Official DCMTK Github Mirror
jeffduda/dicom_tree
Scan a directory of dicom files and build a tree (study - series - instance) with tag info
jeffduda/EigenNeuroAnatomy
Exploring eigenanatomy methodologies for neuroimaging
jeffduda/gershuni_apps
Helper apps and example for imaging data on the LPC
jeffduda/greedy
Very fast greedy diffeomorphic registration code
jeffduda/greedyr
R wrapper for greedy registration
jeffduda/ITKIOFDF
Implement's Glenn Pierce's itk::FDFImageIO as an ITK Remote Module
jeffduda/ITKR
port of ITK to R
jeffduda/PennU24Resource
Penn Quantitative Imaging Resource for Pancreatic Cancer
jeffduda/PICSLFigs
R tools for generating figures from medical imaging data
jeffduda/PMACS_utils
Utility scripts for running jobs on pmacs
jeffduda/route18-draft
drafting app
jeffduda/SectionNExpression
Reconstruct sections and expression images
jeffduda/simple_itk_helpers
helper functions and apps for python SimpleITK
jeffduda/SKPokerEvalR
R wrapper for SKPokerEval
jeffduda/WhoTracksTheTrackers
A survey of fiber tractography software with practical examples