Pinned Repositories
epp
Implementation of EPP model for HIV epidemic estimates
epp-spectrum
eppasm-rhybrid-paper
Code for reproducing analysis: "EPP-ASM and the r-hybrid model: new tools for estimating HIV incidence trends in sub-Saharan Africa"
gbdeppaiml
HIV estimation analysis for the Global Burden of Disease Study
IMIS-example-parallel
C implementation of Incremental Mixture Importance Sampling (IMIS; Raftery, Bao. Biometrics 2010) using GNU Scientific Library
inla-sandbox
Notes on figuring out the details
naomi-model-paper
read-epp-spectrum
R functions to parse output files from Spectrum and EPP programs (used for UNAIDS national HIV epidemic estimates)
tasp-and-early-infection
Code for TasP and Early Infection paper
jeffeaton's Repositories
jeffeaton/epp
Implementation of EPP model for HIV epidemic estimates
jeffeaton/inla-sandbox
Notes on figuring out the details
jeffeaton/naomi-model-paper
jeffeaton/eppasm-rhybrid-paper
Code for reproducing analysis: "EPP-ASM and the r-hybrid model: new tools for estimating HIV incidence trends in sub-Saharan Africa"
jeffeaton/gbdeppaiml
HIV estimation analysis for the Global Burden of Disease Study
jeffeaton/adcomp
AD computation with Template Model Builder (TMB)
jeffeaton/adr-naomi-metadata
jeffeaton/anclik
C implementation of ANC HIV prevalence likelihood described by Alkema, Raftery, Clark (2007)
jeffeaton/blc-popvis
Blantyre City population raster visualisation
jeffeaton/ckanext-unaids
CKAN Extension for UNADS Styling
jeffeaton/dbtmb
jeffeaton/elgm-inf
Integrated nested Laplace approximations for extended latent Gaussian models with application to the Naomi HIV model
jeffeaton/fertility_orderly
jeffeaton/geepack
Generalized Estimating Equations
jeffeaton/ghaeigentest
What the Package Does (One Line, Title Case)
jeffeaton/git-intro
Material for teaching git
jeffeaton/hint
HIV Indicators Tool for district level estimates of HIV epidemic indicators
jeffeaton/hintr
HIV Indicators Tool R API
jeffeaton/jeffeaton.github.io
jeffeaton/ktools
Trivial functions
jeffeaton/naomi1
Archive of naomi 1.x.x model
jeffeaton/orderly
:hospital::ambulance: Lightweight Reproducible Reporting for R
jeffeaton/orderly.sharepoint
:office::ambulance::office: orderly on sharepoint
jeffeaton/pkgapi
jeffeaton/reside-ic.github.io
Reside-IC blog
jeffeaton/spectrum-frr-estimates
Code for reproducing analysis of fertility rate ratios by age, CD4, and ART status for Spectrum 2019
jeffeaton/threemc
Matt's Model for Male Circumcision
jeffeaton/TMBtools
Tools for Developing R Packages Interfacing with TMB
jeffeaton/tmp-zaf-district
jeffeaton/unaids_data_specifications
Specifications for data inputs requested by UNAIDS