Pinned Repositories
compare_genomes
A comparative genomics workflow using Nextflow, conda, Julia and R
db
A simple SQLite database in R for genomic prediction
epistasisfeatures
gp
Genomic prediction cross-validation using penalised, Bayesian and mixed linear models
imputef
Allele frequency imputation through linkage-informed k-nearest neighbour-derived weighted mean allele frequency prediction
Lolium_rigidum_genome_assembly_and_annotation
Lolium rigidum genome assembly and annotation
plantSegment3D
Segmentation of 3D plant models
poolgen
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
simquantgen
Simulate genotype and phenotype data for quantitative genetics analyses
violinplotter
R package for plotting and comparing means with violin plots
jeffersonfparil's Repositories
jeffersonfparil/compare_genomes
A comparative genomics workflow using Nextflow, conda, Julia and R
jeffersonfparil/violinplotter
R package for plotting and comparing means with violin plots
jeffersonfparil/Lolium_rigidum_genome_assembly_and_annotation
Lolium rigidum genome assembly and annotation
jeffersonfparil/plantSegment3D
Segmentation of 3D plant models
jeffersonfparil/poolgen
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
jeffersonfparil/jeffersonfparil.github.io
jeffersonfparil/SeedMatic
Seed phenotying and germination assessment using photographs.
jeffersonfparil/simquantgen
Simulate genotype and phenotype data for quantitative genetics analyses
jeffersonfparil/tebv
Trial-estimated breeding values: best linear unbiased predictors and estimators (BLUPs & BLUEs) of entries in single and multi-environment breeding trials under completely randomised, randomised complete/incomplete block, and spatial designs (CRD, RBD & spatial)
jeffersonfparil/advent_of_code
jeffersonfparil/db
A simple SQLite database in R for genomic prediction
jeffersonfparil/epistasisfeatures
jeffersonfparil/gp
Genomic prediction cross-validation using penalised, Bayesian and mixed linear models
jeffersonfparil/imputef
Allele frequency imputation through linkage-informed k-nearest neighbour-derived weighted mean allele frequency prediction
jeffersonfparil/kungAnikAnik
Creative commons attributed vector graphics and other digital art works
jeffersonfparil/pucci
An OS named after *Puccinia maydis* (common rust fungus species infecting maize and sorghum)
jeffersonfparil/align_fastq
Alignment or mapping of nucleotide sequencing reads
jeffersonfparil/allergen5
Trying to detect signatures of selection in allergen 5 of Lolium perenne and Lolium rigidum
jeffersonfparil/btr-like-UTRs-search
Search for UTRs of BTR-like genes
jeffersonfparil/drivechasingecol
Code, and data repository accompanying the manuscript titled: "Slow and steady wins the race: spatial and stochastic processes and the failure of suppression gene drives"
jeffersonfparil/GPAS-landscape-simulation
jeffersonfparil/GWAlpha.jl
Genomic prediction and association analysis (GPAS) of quantitative traits using pool sequencing data, including population landscapes, individual-based and pool-based GPAS cross-validation simulations.
jeffersonfparil/jeffersonfparil
Config files for my GitHub profile.
jeffersonfparil/ox
An independent Rust text editor that runs in your terminal!
jeffersonfparil/pflexnet
Pseudo-orthonormal elastic-net-like regularisation
jeffersonfparil/pflexnetr
jeffersonfparil/simpleRplots
Simple plots using base R
jeffersonfparil/slides
Terminal based presentation tool
jeffersonfparil/sommer
jeffersonfparil/vscode_config