Pinned Repositories
autopy
A simple, cross-platform GUI automation toolkit for Python.
biodas
A django tastypie implementation of a BioDAS server.
biopython
Official git repository for Biopython (converted from CVS)
bioruby-ngs
This plugins is intended to wrap the common software used for Next Generation Sequencing data
combat.py
python / numpy / pandas / patsy version of ComBat for removing batch effects.
d3py
a plottling library for python, based on D3
dalliance
Interactive web-based genome browser.
edgepy
python based edgeR for learning and fun
genda
genda a genetics library in pandas
mimRNA
Useful functions to use with edgeR
jeffhsu3's Repositories
jeffhsu3/_dotfiles
configuration files
jeffhsu3/anndata
Annotated data.
jeffhsu3/arboreto
A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
jeffhsu3/batchglm
Fit generalized linear models in python.
jeffhsu3/BERMUDA
BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.
jeffhsu3/chumpy
jeffhsu3/deepface
Deep Learning Models for Face Detection/Recognition/Alignments, implemented in Tensorflow
jeffhsu3/ENAS-pytorch
PyTorch implementation of "Efficient Neural Architecture Search via Parameters Sharing"
jeffhsu3/ExPecto
jeffhsu3/factor_analyzer
A Python module to perform exploratory factor analysis.
jeffhsu3/fastStructure
A variational framework for inferring population structure from SNP genotype data.
jeffhsu3/gpt-2
Code for the paper "Language Models are Unsupervised Multitask Learners"
jeffhsu3/GTEx_histology
A library for working with genetic association of GTEx_histology data.
jeffhsu3/jeffhsu3.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
jeffhsu3/keras-vggface
VGGFace implementation with Keras Framework
jeffhsu3/liftOverPlink
A wrapper for liftOver for converting plink genotype data between different genome reference builds
jeffhsu3/linear-attention-transformer
Transformer based on a variant of attention that is linear complexity in respect to sequence length
jeffhsu3/mda_models_scripts
Wb simulation models
jeffhsu3/pyro
Deep universal probabilistic programming with Python and PyTorch
jeffhsu3/QPCR
Calculate the Delta_Ct, Delta_Delta_Ct , Fold Changes and Student's t-tests from qRT-PCR experiment
jeffhsu3/rl-teacher
Code for Deep RL from Human Preferences [Christiano et al]. Plus a webapp for collecting human feedback
jeffhsu3/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
jeffhsu3/science_rcn
Reference implementation of a two-level RCN model
jeffhsu3/scprep
A collection of scripts and tools for loading, processing, and handling single cell data.
jeffhsu3/stylegan2-pytorch
Simplest working implementation of Stylegan2 in Pytorch
jeffhsu3/tensorfork
jeffhsu3/terraform-django-ecs
Provision a Django project on ECS with Terraform
jeffhsu3/tilde
A nuclear option for forensic DNA identification of extremely low-coverage sequence data
jeffhsu3/XSim.cpp
simulate sequence data and complicated pedigree structures
jeffhsu3/zipline
Zipline-Live, a Pythonic Algorithmic Trading Library