Pinned Repositories
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
bacass
Simple bacterial assembly and annotation pipeline
BLASTphylo_online_appendix
Further Tables and Figures
Doktorarbeit_Laura_Luib
Online Appendix für die Doktorarbeit von Laura Luib
FASTAptameR-2.0
This repository holds the FASTAptameR 2.0 code and related resources.
fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
live-nano
A shiny GUI for real-time species identification from Nanopore data
masterthesis_Lea_Friedrich
Analysis data for the master's thesis of Lea Friedrich
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-co.re
Code and files for the main nf-core website.
jenmuell's Repositories
jenmuell/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
jenmuell/bacass
Simple bacterial assembly and annotation pipeline
jenmuell/BLASTphylo_online_appendix
Further Tables and Figures
jenmuell/Doktorarbeit_Laura_Luib
Online Appendix für die Doktorarbeit von Laura Luib
jenmuell/FASTAptameR-2.0
This repository holds the FASTAptameR 2.0 code and related resources.
jenmuell/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
jenmuell/live-nano
A shiny GUI for real-time species identification from Nanopore data
jenmuell/masterthesis_Lea_Friedrich
Analysis data for the master's thesis of Lea Friedrich
jenmuell/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
jenmuell/nf-co.re
Code and files for the main nf-core website.
jenmuell/nxf-bacass_samplesheet_generator
jenmuell/nxf-bcl
A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)
jenmuell/phylotree.js
jenmuell/plasmIDent
Fork of the plasmIDent pipeline
jenmuell/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
jenmuell/test-datasets
Test data to be used for automated testing with the nf-core pipelines
jenmuell/tools
Python package with helper tools for the nf-core community.