DiffPreproc_rodent is an open source image rreprocessing pipeline for rodent dMRI. It conducts preprocessing and confound correction, and supplies quality control metrics.
Limitations
There is currently still a need to manually confirm that the bvecs are aligned correctly with the orientation of the diffusion weighted images. Any reorientation of the bvec files needs to be complete before running DiffPreproc_rodent.
Development
Developed by Jenna Hanmer and Stamatios Sotiropoulos. This is still a work-in-progress.