Pinned Repositories
SDC-BIDS-fMRI
fMRI Imaging Analysis
BOONStim
Bayesian Optimization of NeuroStimulation
drmaa_executor_plugin
Airflow Executor plugin for using DRMAA-compliant HPC systems
fieldopt
Python package containing Python geometry libraries for MRI mesh manipulation and mapping
Matching-Pennies-RL-Model
Reinforcement learning model for quantifying learning and bias parameters for direction/color matching pennies task
niviz
Extensions to niworkflows and nipype for flexible visualization and reporting of pre-existing outputs
niviz-rater
Simple flexible web application to configure and carry out rating of MR images
SDC-BIDS-fMRI_old
Scientific-Compute Working Group Workshop on performing analysis of neuroimaging data in python
simnibs_tutorial
Short tutorial on using the SimNIBS API and mapping TMS Tech coil angles
TIGR_PURR
TIGR PURR: TIGRLab Pipelines for Utterly Reproducible Research
jerdra's Repositories
jerdra/SDC-BIDS-fMRI_old
Scientific-Compute Working Group Workshop on performing analysis of neuroimaging data in python
jerdra/simnibs_tutorial
Short tutorial on using the SimNIBS API and mapping TMS Tech coil angles
jerdra/2019-05-27-fmri-analysis-python
http://jerdra.github.io/2019-05-27-fmri-analysis-python/
jerdra/Global-Toronto-11-2019
BrainHack Global 2019 Toronto
jerdra/bho2020_julia
Trying to learn Julia at the same time as coding stuff is harder than it looks
jerdra/BHTO19_GradientsVariability
Brainhack Global Toronto 2019 Project - Inter-subject variability in Marguliesian Gradientage
jerdra/BHTO19_StarterProject
(name to be changed)
jerdra/boonstim-reliability
Consistency and reliability checks at various stages of BOONStim
jerdra/boutiques
JSON schema and tools for boutiques application descriptors http://boutiques.github.io
jerdra/CAN-ACN-05-2019
Test site for main brainhack repo
jerdra/ciftify
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
jerdra/d3-book
Code examples for “Interactive Data Visualization for the Web”
jerdra/devops-essentials-sample-app
jerdra/express-locallibrary-tutorial
MDN Web development deployment
jerdra/FIONA-QC-PHANTOM
Online QC operations performed on Phantom MRI data
jerdra/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
jerdra/gyral_orientations
Set of notebooks exploring the calculation of gyral orientations from mid-line in CIFTI files
jerdra/hcppipelines_qc_notes
Development notes for HCPPipelines
jerdra/mdn-asteroid-deployment
jerdra/multiband-censoring-comparisons
jerdra/neuroimaging-carpentry
Neuroimaging Carpentry
jerdra/nextflow-explore
A collection of experiments for trying to figure out how to create even more configurable and modular pipelines in nextflow
jerdra/nilearn
Machine learning for NeuroImaging in Python
jerdra/nilearn_surface_viz
Repo for testing nilearn surface visualizations for later automation
jerdra/numerical_algorithms
Some numerical algorithms that turn out to be pretty useful for daily work
jerdra/scwg_intro_to_ml_theory
Materials Repo for Scientific Compute Working Group intro to ML. Will be used to generate figures/data for slides
jerdra/SDC-BIDS-IntroMRI
jerdra/simnibs
Simulation of Non-Invasive Brain Stimulation
jerdra/simnibs_python_modules
Repo for updating Python modules in SimNIBS
jerdra/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcesssing tools)