jeremiek

Pinned Repositories

• AirLift

  AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shared between the two reference genomes and enables remapping across all parts of the references. Described by Kim et al. (preliminary version at http://arxiv.org/abs/1912.08735)

  Language:C26874

• BurstLink

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• FastRemap

  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: https://arxiv.org/pdf/2201.06255.pdf

  Language:C++26622

• GRIM

  Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast Seed Location Filtering in DNA Read Mapping using Processing-in-Memory Technologies" (preliminary version at https://arxiv.org/pdf/1711.01177.pdf)

  Language:C115

jeremiek's Repositories