jerryji1993
PhD @ NU in Bioinformatics. Data Science/ML/DL/Data Mining/Precision Medicine
Northwestern University Feinberg School of MedicineChicago, IL
Pinned Repositories
bayesian-stat-machine-learning
"Bayesian Statistics & Machine Learning" Reading Group at Northwestern Statistics
bootcamp-2018
Materials for 2018 MSiA Boot Camp
DNABERT
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
efficientnet_pytorch
EfficientNet implemented in Pytorch with SyncBatchNorm layers on multiple GPUs and memory optimization trick for my Kaggle competitions. Code modified from https://github.com/lukemelas/EfficientNet-PyTorch/.
isoform_drug_targets
In silico analysis of alternative splicing on drug-target gene interactions
kidGAN
kidGAN to generate children/babies images based on input of parents pictures
MetMCC-SCAN
Predicting metastasis of Merkel Cell Carcinoma
PUBG_winner_prediction
PUBG Finish Placement Prediction project from Kaggle competition
sradownload_star_rsem
My script for SRAdownload-STAR-RSEM pipeline for transcriptome analysis
wikiart_style_classification
Machine: The New Art Connoisseur (https://arxiv.org/abs/1911.10091)
jerryji1993's Repositories
jerryji1993/DNABERT
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
jerryji1993/kidGAN
kidGAN to generate children/babies images based on input of parents pictures
jerryji1993/bayesian-stat-machine-learning
"Bayesian Statistics & Machine Learning" Reading Group at Northwestern Statistics
jerryji1993/efficientnet_pytorch
EfficientNet implemented in Pytorch with SyncBatchNorm layers on multiple GPUs and memory optimization trick for my Kaggle competitions. Code modified from https://github.com/lukemelas/EfficientNet-PyTorch/.
jerryji1993/MetMCC-SCAN
Predicting metastasis of Merkel Cell Carcinoma
jerryji1993/sradownload_star_rsem
My script for SRAdownload-STAR-RSEM pipeline for transcriptome analysis
jerryji1993/wikiart_style_classification
Machine: The New Art Connoisseur (https://arxiv.org/abs/1911.10091)
jerryji1993/bootcamp-2018
Materials for 2018 MSiA Boot Camp
jerryji1993/isoform_drug_targets
In silico analysis of alternative splicing on drug-target gene interactions
jerryji1993/PUBG_winner_prediction
PUBG Finish Placement Prediction project from Kaggle competition
jerryji1993/caret
caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models
jerryji1993/Clinical-Trial-Parser
Library for converting clinical trial eligibility criteria to a machine-readable format.
jerryji1993/databases_workshop
RCS Intro to Databases workshop materials
jerryji1993/diceR
Diverse Cluster Ensemble in R
jerryji1993/EMpire
Isoform-level quantification of ribosome-footprint and proteomic data
jerryji1993/flask-project
jerryji1993/Introduction-to-Python-Programming-and-Data-Science
Introduction to Python Programming and Data Science
jerryji1993/jerryji1993.github.io
jerryji1993/keras-squeeze-excite-network
Implementation of Squeeze and Excitation Networks in Keras
jerryji1993/mlrefined
Jupyter notebooks, Python and MATLAB code examples, and demos from the textbook "Machine Learning Refined" (Cambridge University Press). See our blog https://jermwatt.github.io/mlrefined/index.html for interactive versions of many of the notebooks in this repo.
jerryji1993/MSIA-D3Course-2019
jerryji1993/proteinnet
Standardized data set for machine learning of protein structure
jerryji1993/rgn
Recurrent Geometric Networks for end-to-end differentiable learning of protein structure