Extra tissues to match with GTex
Closed this issue · 3 comments
jergosh commented
Hi,
We would very much like to use gganatograms for a couple of projects running in our group. I think it fits very well with what we would like to demonstrate using GTex data, except that the pituitary and salivary glands are missing in gganatogram. Would it be possible to add them as two (optional) tissues? I think matching between gganatogram and GTex tissues would potentially be useful to other people using these data.
Best,
Greg
jespermaag commented
Hi Greg,
I'll see if I can add them this week.
I'll keep you posted.
jergosh commented
That's great! Thanks very much, appreciate it.
jespermaag commented
Fixed it now for human.
hgMale_key[hgMale_key$type=='hormone',]
organ type colour value
1 thyroid_gland hormone yellow 0.9906961
5 pituitary_gland hormone yellow 13.0039467
38 salivary_gland hormone yellow 9.6428882
39 parotid_gland hormone yellow 18.9632077
40 submandibular_gland hormone yellow 3.7169400
45 adrenal_gland hormone yellow 19.1863695
hgFemale_key[hgFemale_key$type=='hormone',]
organ colour type value
16 pituitary_gland yellow hormone 0.4179739
43 thyroid_gland yellow hormone 13.7657837
45 parotid_gland yellow hormone 19.4480276
50 adrenal_gland yellow hormone 11.3729465
55 salivary_gland yellow hormone 8.5902632
69 submandibular_gland yellow hormone 15.0929987