Pinned Repositories
analysis-write-ups
A repository to hold my work summaries for various stats and bioinfo projects
aquascope
Forked to add CDC on-prem config file
CV
My CV and resume
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
genome-assembly
Contains scripts used during "Genome Assembly" portion of BIOL7210
Helpers
A repo of functions I think will be useful to me in my work
HMAS-Internal-Validation
This repository contains scripts and other documents pertaining to internal validation of the HMAS QC pipeline.
HMAS-Positive-Controls
Data pertaining to the Enterics AMR Primer Panel positive controls design and testing (2019). The objective was to design positive controls for the highly-multiplexed amplicon sequencing (HMAS) primer panel.
HMAS-QC-Pipeline
A pipeline for performing quality control on HMAS data, in preparation for downstream MLST-like or AMR-like analyses.
HMAS-SNP-calling
Testing SNP calling methods for HMAS data (downstream of HMAS QC)
jessicarowell's Repositories
jessicarowell/HMAS-SNP-calling
Testing SNP calling methods for HMAS data (downstream of HMAS QC)
jessicarowell/analysis-write-ups
A repository to hold my work summaries for various stats and bioinfo projects
jessicarowell/aquascope
Forked to add CDC on-prem config file
jessicarowell/CV
My CV and resume
jessicarowell/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
jessicarowell/genome-assembly
Contains scripts used during "Genome Assembly" portion of BIOL7210
jessicarowell/Helpers
A repo of functions I think will be useful to me in my work
jessicarowell/HMAS-Internal-Validation
This repository contains scripts and other documents pertaining to internal validation of the HMAS QC pipeline.
jessicarowell/HMAS-Positive-Controls
Data pertaining to the Enterics AMR Primer Panel positive controls design and testing (2019). The objective was to design positive controls for the highly-multiplexed amplicon sequencing (HMAS) primer panel.
jessicarowell/HMAS-QC-Pipeline
A pipeline for performing quality control on HMAS data, in preparation for downstream MLST-like or AMR-like analyses.
jessicarowell/parallel-fastq-dump
parallel fastq-dump wrapper
jessicarowell/r-recipes
R Recipes
jessicarowell/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
jessicarowell/mycosnp-nf
CDCgov/mycosnp-nf
jessicarowell/phoenix
🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
jessicarowell/stress-testing
Public repository to storing sample sheets and other files needed for stress testing.
jessicarowell/Ubuntu-Setup
Contains information I use to set up my PC builds (or WSL) when I screw them up