jessieren
Research Scientist at Google Brain. Previous PhD and Postdoc in Computational Biology and Bioinformatics at the University of Southern California.
Pinned Repositories
SiC-seq
Scripts used in the 2017 SiC-seq paper
alignment-free
basic tools for computing alignment-free sequence comparison measures
DeepVirFinder
Identifying viruses from metagenomic data by deep learning
jessieren.github.io
methpipe
A pipeline for analyzing DNA methylation data from bisulfite sequencing.
VirFinder
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
VirHostMatcher
VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
deeplift
Public facing deeplift repo
jessieren's Repositories
jessieren/VirFinder
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
jessieren/DeepVirFinder
Identifying viruses from metagenomic data by deep learning
jessieren/VirHostMatcher
VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
jessieren/alignment-free
basic tools for computing alignment-free sequence comparison measures
jessieren/jessieren.github.io
jessieren/methpipe
A pipeline for analyzing DNA methylation data from bisulfite sequencing.