This repo contains files with information on how to extract features to study insulitis in H&E slides.
The folder scripts contain the most recently developed scripts to analyze the images
The scripts have been developed using Groovy-Language
QuPath1 is the main tool for visualization and processing
Leveraging pre-trained machine learning models for islet quantification in type 1 diabetes
https://doi.org/10.1016/j.jpi.2024.100406
Note: This article is currently undergoing copyediting and typesetting before final publication.
[a] https://www.imagescientist.com/qupath-intro
[b] https://qupath.readthedocs.io/en/stable/docs/tutorials/index.html