Pinned Repositories
larval_gonad
Preliminary study to figure out how many larval gonads are needed for RNA-Seq
nbreport
Basic HTML nbconvert HTMLExporter for generating html reports from notebooks.
ncbi_remap
This is the drosSRA project, where we are remapping all Drosophila melanogaster RNA-seq data to FlyBase release 6 and updating annotations.
s2rnai
S2 Cell RNAi Project
sramongo
A package to download metadata from SRA/Biosample/Geo and dump into a mongo database.
tapeAnalyst
A program to analyze gels from the Agilent Tape Station
jfear's Repositories
jfear/ncbi_remap
This is the drosSRA project, where we are remapping all Drosophila melanogaster RNA-seq data to FlyBase release 6 and updating annotations.
jfear/s2rnai
S2 Cell RNAi Project
jfear/burntsushi-advent-of-code-2018
Rust solutions to AoC 2018
jfear/command-line-rust
Code for Command-Line Rust (O'Reilly, ISBN 9781098109417) https://learning.oreilly.com/library/view/command-line-rust/9781098109424/
jfear/complete-dbt-bootcamp-zero-to-hero
Supplementary Materials for the The Complete dbt (Data Build Tool) Bootcamp Udemy course
jfear/docker-entrypoint-example
jfear/dotfiles
Fish-shell dotfiles
jfear/dotfiles.fish
my own dotfiles ported to fish
jfear/dotfiles2
My current dotfiles
jfear/fastq_set
Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
jfear/get-github-app-pat
jfear/Getting-Started-with-DuckDB
Getting started with DuckDB, by Packt Publishing
jfear/jaffle-shop
🥪🦘 An open source sandbox project exploring dbt workflows via a fictional sandwich shop's data.
jfear/justinfear.com
My professional website.
jfear/learning-rust-catr
jfear/Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
jfear/nerdfont-webfonts
Nerd Fonts for cros and hterm
jfear/rasusa
Randomly subsample sequencing reads to a specified coverage
jfear/repair-seq
processing, analysis, and visualization of data from Repair-seq screens
jfear/rust-bufread
Example showing the benefits of BufRead in Rust
jfear/rust-codespace-template
A template to generate rust codespace environment.
jfear/rust-data-analysis
Rust for data analysis encyclopedia (WIP).
jfear/rust-in-action-code
Source code for the book Rust in Action
jfear/rust-test
jfear/rust-toolbox
Rust utility code
jfear/RustAlgorithms
All Algorithms implemented in Rust
jfear/schema-library
jfear/SIQ
Sequence Interrogation and Qualification
jfear/wf-alignment
jfear/wf-human-sv
Structural variation workflow (and benchmarking) using lra and cuteSV