Pinned Repositories
bio-cwl-tools
CWL CommandLineTool descriptions for biology/life-sciences related applications
biobb_adapters
Biobb_adapters is the Biobb module collection to use the building blocks with several workflow managers.
bioinfo-workflows
Bioinformatics workflows and extensions for workflow inference compiler
CMol
This is a mono-repo of various molecular dynamics projects from The Lewis Group at WVU. http://fireball.phys.wvu.edu This code is from ~2006-2010.
cwltool
Common Workflow Language reference implementation
ddm-random-matrices
This is research code that was used to calculate / predict the mass spectra of a Dynamical Dark Matter ensemble in the publication of https://arxiv.org/abs/1601.05094
haskelltalk
This is the code for my series of introductory haskell talks.
rocket_control
A simple orbital rocket trajectory simulator, for designing exotic variants of the SpaceX Starship architecture.
workflow-inference-compiler
A domain specific language for creating scientific pipelines
workflow_inference_compiler
DSL for inferring the edges of a CWL workflow DAG, with examples in molecular dynamics
jfennick's Repositories
jfennick/workflow_inference_compiler
DSL for inferring the edges of a CWL workflow DAG, with examples in molecular dynamics
jfennick/ddm-random-matrices
This is research code that was used to calculate / predict the mass spectra of a Dynamical Dark Matter ensemble in the publication of https://arxiv.org/abs/1601.05094
jfennick/bio-cwl-tools
CWL CommandLineTool descriptions for biology/life-sciences related applications
jfennick/biobb_adapters
Biobb_adapters is the Biobb module collection to use the building blocks with several workflow managers.
jfennick/bioinfo-workflows
Bioinformatics workflows and extensions for workflow inference compiler
jfennick/CMol
This is a mono-repo of various molecular dynamics projects from The Lewis Group at WVU. http://fireball.phys.wvu.edu This code is from ~2006-2010.
jfennick/cwltool
Common Workflow Language reference implementation
jfennick/haskelltalk
This is the code for my series of introductory haskell talks.
jfennick/rocket_control
A simple orbital rocket trajectory simulator, for designing exotic variants of the SpaceX Starship architecture.
jfennick/workflow-inference-compiler
A domain specific language for creating scientific pipelines
jfennick/image-workflows
jfennick/mm-workflows
Molecular modeling workflows and extensions for workflow inference compiler
jfennick/squadron
This is a collection of scripts for use with the monte carlo particle physics event generator MadGraph5 (https://launchpad.net/mg5amcnlo). This is research code that was intended to be the successor / sequel to https://arxiv.org/abs/1109.6014
jfennick/timeseriesplots
Tools for analyzing and plotting timeseries data in realtime
jfennick/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
jfennick/Typogenetics
This is an implementation of Typogenetics, from Gödel, Escher, Bach (pg 504).
jfennick/waterdata-usgs
This is a collection of utilities for working with the realtime streamflow timeseries data provided by the USGS at https://waterservices.usgs.gov/rest/IV-Service.html