Pinned Repositories
APIS
Initial version of Automated Phylogenetic Inference System in preparation for public release
BioSeq
Bioinformatics Library for Crystal
cipphyloseq
Add on routines to the R "phyloseq" package developed by the C
FrenchRevCal-ruby
Routines for converting standard dates into the French Revolutionary Calendar
Newick-ruby
Routines for manipulating Newick Format phylogenetic trees in Ruby
nimbioseq
Nim Library for sequence (protein/nucleotide) bioinformatics
scripts
Collection of (mostly bioinformatics) scripts that I use in day-to-day work
spacemacs-config
Thermidor-Android
Android version of Thermidor, a French Revolutionary Calendar
xlispstat
Luke Tierney's Xlispstat statistical environment
jhbadger's Repositories
jhbadger/nimbioseq
Nim Library for sequence (protein/nucleotide) bioinformatics
jhbadger/xlispstat
Luke Tierney's Xlispstat statistical environment
jhbadger/scripts
Collection of (mostly bioinformatics) scripts that I use in day-to-day work
jhbadger/spacemacs-config
jhbadger/BioSeq
Bioinformatics Library for Crystal
jhbadger/cipphyloseq
Add on routines to the R "phyloseq" package developed by the C
jhbadger/Mathics
a general-purpose computer algebra system
jhbadger/microbiomeR
Utility routines for graphing/analyzing mothur output
jhbadger/bwa16
!6S pipeline for mapping against a known consortium using BWA
jhbadger/Bzip
Bzip::Reader for reading bz2 files in Crystal
jhbadger/cl-tutor
Common Lisp learning system built on lem
jhbadger/emacs.d
jhbadger/fpdf
Ruby FPDF - PDF generation library for Ruby
jhbadger/homebrew
:beer: The missing package manager for OS X.
jhbadger/jams-singularity
Singularity container for JAMS
jhbadger/lfr
Lisp-flavored Ruby
jhbadger/llr
Lisp-like-R: A lisp that compiles to R in R
jhbadger/lumen
A Lisp for Lua and JavaScript
jhbadger/mothur_process
scripts for processing mothur data at NCI
jhbadger/nand2tetris
My workthrough of of the nand2tetris online course
jhbadger/packages
List of packages for Nimble
jhbadger/paip
jhbadger/phylodb_update
Scripts for maintaining JCVI phylodb database
jhbadger/pico8-stuff
various pico-8 games I've writing
jhbadger/python-tcod
The Python port of libtcod. Includes the python-tdl and libtcodpy modules.
jhbadger/termux-packages
Scripts and patches for building Termux packages.
jhbadger/vimconfig
Vim config files
jhbadger/xchomp
jhbadger/yalsf
Yet Another Little Smalltalk Fork
jhbadger/YAMS16
Simple 16S pipeline running DADA2