Pinned Repositories
amst
Alignment to Median Smoothed Template for FIB-SEM data
bioimage-io-models
Model repository for bioimage.io
blender-python-utils
boost_py_lib
CebraEM
cnn_pg_36_exp
core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
cpp_devel
cremi_python_exp
pytorch_membrane_net
jhennies's Repositories
jhennies/amst
Alignment to Median Smoothed Template for FIB-SEM data
jhennies/CebraEM
jhennies/pytorch_membrane_net
jhennies/bioimage-io-models
Model repository for bioimage.io
jhennies/blender-python-utils
jhennies/cnn_pg_36_exp
jhennies/core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
jhennies/cremi_python_exp
jhennies/elf
Utils and convenience functions for large-scale bio-image analysis.
jhennies/EMBL_upscaling_project
jhennies/git_btm2017
Example used for the git course given at the EMBL btm 2017
jhennies/ice_thickness_cryosol
Rene Henderikx, Maaike Schotman - Cryosol; Simon Fromm, Simone Mattei - ICEM
jhennies/ilastik
ilastik-shell, applets, and workflows to string them together.
jhennies/lazyflow
lazy parallel ondemand zero copy numpy array data flows with caching and dirty propagation
jhennies/mobie-utils-python
Python tools for MoBIE
jhennies/napari
napari: a fast, interactive, multi-dimensional image viewer for python
jhennies/nature_methods_multicut_pipeline
jhennies/nmmp_experiments
jhennies/orthos
orthos
jhennies/py_devel
jhennies/pybdv
python tools for BigDataViewer
jhennies/pyelastix
Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images
jhennies/snAMST
AMST implementation using Snakemake workflow management
jhennies/squirrel
jhennies/supervoxel_merging
jhennies/unet
unet for image segmentation
jhennies/vigra
a generic C++ library for image analysis
jhennies/vis3dee
jhennies/vis3dee_exp
jhennies/volumina
Volume Slicing and Editing