Pinned Repositories
AdapterRemoval
This program was developed to remove residual adapter sequences from next generation sequencing reads. The program handles both single end and paired end data.
adegenet
adegenet: a R package for the multivariate analysis of genetic markers
beast2
Bayesian Evolutionary Analysis by Sampling Trees
Book-PDF-Free
books
CAFE
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
daily_py
save daily code
plot_Demo_code
protein-GO-term-annotation
variant-call
A shell script which implements GATK pipeline for variant calling.
jhh130910's Repositories
jhh130910/protein-GO-term-annotation
jhh130910/Book-PDF-Free
jhh130910/CAFE
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
jhh130910/variant-call
A shell script which implements GATK pipeline for variant calling.
jhh130910/beast2
Bayesian Evolutionary Analysis by Sampling Trees
jhh130910/books
jhh130910/daily_py
save daily code
jhh130910/plot_Demo_code
jhh130910/code-test
jhh130910/cytoscape-tutorials
Collection of modular Cytoscape tutorials for online presentation using reveal.js
jhh130910/DensiTree
Automatically exported from code.google.com/p/densitree
jhh130910/EMBLmyGFF3
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
jhh130910/github_logos
jhh130910/golang
jhh130910/HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
jhh130910/incubator-echarts
A powerful, interactive charting and visualization library for browser
jhh130910/iterm2-zmodem
Automatic ZModem support for iTerm 2
jhh130910/MCScanX
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
jhh130910/miRNA-analysis-pipeline
jhh130910/MrBayes
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
jhh130910/pasta
PASTA (Practical Alignment using SATe and Transitivity)
jhh130910/plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).
jhh130910/plotly.py
An open-source, interactive graphing library for Python :sparkles:
jhh130910/pycharm
jhh130910/sphinx-github-ReadsTheDoc
jhh130910/Stacks_pipeline
An automated and repeatable workflow for processing ddRADseq data using tools including Stacks. Goes from sequencer files to input files for commonly used phylogenetic/phylogeography programs.
jhh130910/timpo
jhh130910/VCF2Dis
VCF2Dis: A new simple and efficient software to calculate p-distance matrix based Variant Call Format
jhh130910/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
jhh130910/workshop-popgenome
Tutorial about R package PopGenome