jhlegarreta
Postdoctoral research fellow interested in diffusion MRI, tractography, deep learning, computational neuroanatomy and reproducible scientific research
Brigham and Women's Hospital, Mass General Brigham/Harvard Medical SchoolBoston, MA, USA
Pinned Repositories
dipy
Diffusion MR Imaging in Python
dwi_ml
Code for people working on machine learning for diffusion MRI
ITKPerformancePlot
ITK performance plots
tractodata
Tractography data
tractometer
Scripts used to recreate the results of the ISMRM 2015 Tractography Challenge
jhlegarreta's Repositories
jhlegarreta/dipy
Diffusion MR Imaging in Python
jhlegarreta/ITK
Insight Segmentation and Registration Toolkit -- Mirror
jhlegarreta/itkAnalyzeObjectMap
A temporary repository for updating the itkAnalyzeObjectMap
jhlegarreta/ITKAnisotropicDiffusionLBR
Smoothing while preserving edges and coherent structures in images with anisotropic diffusion using lattice basis reduction
jhlegarreta/ITKArrayFire
ArrayFire-backed ITK pipelines
jhlegarreta/ITKBioCell
This remote module contains classes related to segmentation of biological cells. It has classes to represent cells' shape, color, and growth state. It also has classes to represent a cell genome, whose expression is modeled by differential equations.
jhlegarreta/ITKBoneEnhancement
jhlegarreta/ITKBSplineGradient
Approximate an image's gradient from a b-spline fit to its intensity
jhlegarreta/ITKColorNormalization
Structure preserving color normalization on H&E images using a reference image
jhlegarreta/ITKEntropyBasedIntensityCorrection
Homogenize intensity across an image with exposure bias when it contains few intensity states
jhlegarreta/ITKGrowCut
ITKGrowCut is a remote module for ITK. It segments a 3D image from user-provided foreground and background seeds.
jhlegarreta/ITKHigherOrderAccurateGradient
Filters for calculating higher order accurate numerical derivatives and gradients.
jhlegarreta/ITKIOFDF
Implement's Glenn Pierce's itk::FDFImageIO as an ITK Remote Module
jhlegarreta/ITKIOMeshSTL
MeshIO class to read and write ITK meshes into STL files
jhlegarreta/ITKIOOpenSlide
An ITK ImageIO module for the OpenSlide library.
jhlegarreta/ITKIOTransformDCMTK
An ITK module to read DICOM spatial transforms.
jhlegarreta/ITKLabelPointSet
jhlegarreta/itkMGHImageIO
MGH file ITK reader
jhlegarreta/ITKNDReg
jhlegarreta/ITKOptimizationMonitor
Tools to monitor and visualize ITK registration and other optimization processes
jhlegarreta/ITKPolarTransform
A module for ITK to transform from cartesian to polar coordinate systems and back.
jhlegarreta/ITKShape
ITK-Based Shape Analysis Filters (e.g Procrustes Alignment for Meshes)
jhlegarreta/ITKSkullStrip
Perform automatic skull-stripping for neuroimage analysis
jhlegarreta/ITKStrain
jhlegarreta/ITKThickness3D
An ITK module to compute 3D thickness
jhlegarreta/ITKTopologyControl
ITK external module to control topology of binary mask regions
jhlegarreta/ITKVariationalRegistration
jhlegarreta/ITKVkFFTBackend
VkFFT backends for ITK FFT classes.
jhlegarreta/ITKVTKGlue
jhlegarreta/LesionSizingToolkit
http://public.kitware.com/LesionSizingKit/index.php/Main_Page