rds2tsv.R

Streams R Data Serialized (rds) format from stdin to stdout in tab-separated-values (tsv) using R

Install

sudo sh -c 'curl -L https://raw.githubusercontent.com/jhpoelen/rds2tsv.R/main/rds2tsv.R > /usr/local/bin/rds2tsv.R && chmod +x /usr/local/bin/rds2tsv.R'

⚠️ please inspect this install script before running it.

Example

curl -L https://open.flinders.edu.au/ndownloader/files/43331472\
 | ./rds2tsv.R\
 > beeTaxonomy.tsv

with first 2 lines of beeTaxonomy.tsv being:

flags	taxonomic_status	source	accid	id	kingdom	phylum	class	order	family	subfamily	tribe	subtribe	validName	canonical	canonical_withFlags	genus	subgenus	species	infraspecies	authorship	taxon_rank	valid	notes
	accepted	DiscoverLife	0	4	Animalia	Arthropoda	Insecta	Hymenoptera	Andrenidae	Panurginae	Calliopsini		Acamptopoeum argentinum (Friese, 1906)	Acamptopoeum argentinum	Acamptopoeum argentinum	Acamptopoeum		argentinum		(Friese, 1906)	Species	TRUE

with data found in:

Dorey, J.B., Fischer, E.E., Chesshire, P.R. et al. A globally synthesised and flagged bee occurrence dataset and cleaning workflow. Sci Data 10, 747 (2023). https://doi.org/10.1038/s41597-023-02626-w