jhu99

Pinned Repositories

BiwalkLDA
Language:Matlab1 2 04
davae_paper
Language:Python1 1 01
db_hand
Connector of NCBI databases
Language:R1 1 00
localali
Automatically exported from code.google.com/p/localali
Language:C++2 0 01
miteFinder
Language:C++9 1 115
netcoffee
Automatically exported from code.google.com/p/netcoffee
Language:C++4 2 21
NetCoffee2
Language:C++3 1 01
scanalyse
C++ library for single cell analyses
Language:C++3 3 02
scbean
Single-cell data analysis
Language:Python15 4 24
vipcca
Single-cell alignment
Language:Python9 1 33

jhu99's Repositories

jhu99/scbean
Single-cell data analysis
Language:Python15 4 24
jhu99/miteFinder
Language:C++9 1 115
jhu99/vipcca
Single-cell alignment
Language:Python9 1 33
jhu99/NetCoffee2
Language:C++3 1 01
jhu99/scanalyse
C++ library for single cell analyses
Language:C++3 3 02
jhu99/BiwalkLDA
Language:Matlab1 2 04
jhu99/davae_paper
Language:Python1 1 01
jhu99/db_hand
Connector of NCBI databases
Language:R1 1 00
jhu99/GRNLMM
gene regulatory network with linear mixed model
Language:R1 1 0
jhu99/twadn
Time wrapping algorithm for aligning dynamic networks
Language:C++1 1 00
jhu99/Batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
Language:Jupyter Notebook0 0
jhu99/dca
Deep count autoencoder for denoising scRNA-seq data
Language:Python1 0
jhu99/dec
Language:Jupyter Notebook0 0
jhu99/desc
Deep Embedding for Single-cell Clustering
Language:Python1 0
jhu99/ExpansionHunter
A tool for estimating repeat sizes
Language:C++0 0
jhu99/GCNPCC
gene co-expression networks using partial correlation coefficients
Language:R1 0
jhu99/jhulab
a template for research group sites
Language:HTML0 0
jhu99/ScaleHD
Automated DNA micro-satellite genotyping
Language:Python
jhu99/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Language:Python1 0
jhu99/scRNA.seq.datasets
Collection of public scRNA-Seq datasets used by our group
Language:R1 0
jhu99/scvae
Deep learning for single-cell transcript counts
Language:Python0 0
jhu99/seqan
SeqAn's official repository.
Language:C++0 0
jhu99/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Language:C++0 0
jhu99/seurat-wrappers
Community-provided extensions to Seurat
Language:R0 0
jhu99/SPARK
Spatially resolved transcriptomic analysis
Language:R0 0
jhu99/SPARK-Analysis
spatially resolved data analysis
Language:R0 0
jhu99/st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
Language:Python1 0
jhu99/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python0 0
jhu99/VIMCCA_paper
Language:Python1 0
jhu99/vipcca_paper
Language:R1 01