Phenotypic Distribition- Significant Markers

[srad26]

Hello,

I am wondering if there is any information on the package used to create phenotypic distribution graphics that show allelic differences at significant SNPs. I have not been able to find information in your user manual describing these outputs.

Thanks!

[jiabowang]

We will improve our manual. The phenotype distribution is based on the significant marker genotype. That is outputted as default in the GAPIT.