Issues
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Does gapit have a python version
#142 opened by yitengfei120011 - 2
PVE outpit in GAPIT
#138 opened by Ray-w-r - 0
Issues with hapmap format
#141 opened by jensenjoseph - 5
- 4
- 1
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- 16
"Perform numericalization": Error in count.temp[, 2] : subscript out of bounds
#131 opened by PollyRosy - 2
[1] "Calling prcomp..." *** caught segfault *** address 0x7f9c6c292e30, cause 'memory not mapped'
#121 opened by liuye2024 - 2
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Error in GAPIT instalation
#137 opened by 9437951970 - 0
‘min’ not meaningful for factors
#136 opened by yaoxkkkkk - 1
Error in XCVI %*% beta.I : non-conformable arguments
#125 opened by stan2019 - 1
- 1
- 1
blink for kmer GWAS
#130 opened by dosshra - 1
GAPIT forum missing
#132 opened by Sandae33 - 1
"Filting marker for GAPIT.Genotype.View function ..." Error in seq.default(max(ns)/4 + 200, max(ns)/3, 200),bwrong sign in 'by' argument
#135 opened by PollyRosy - 1
model selection error
#128 opened by sebranham - 0
[1] "Filting marker for GAPIT.Genotype.View function ..." Error in axis(1, at = chr.pos[odd], labels = chr[odd], tick = FALSE) : no locations are finite
#134 opened by PollyRosy - 2
Random Model Error
#108 opened by maggiethomas - 13
- 5
Blink error
#98 opened by lurens - 1
Inconsistent results with Version 3.5?
#126 opened by Lightoscope - 1
Gapit for TWAS?
#122 opened by YouxinZhao - 1
"GD does not mach GM in Manhattan !!!" Error in `[.data.frame`(GD, , !is.na(GI.MP[, 3])) :
#123 opened by zhaohy1208 - 1
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Negative numbers in MAF
#124 opened by zhen0506 - 8
- 1
gBLUP - extract gene effect size
#118 opened by KarinaGuo - 3
imputation data analysis
#113 opened by yunaibiao - 3
Conflict between graphics::layout and plotly::layout when using Inter.Plot = TRUE
#116 opened by Lightoscope - 3
Many False-Positives
#115 opened by Sanewsg - 0
GLM model output same results
#117 opened by Amadeus11111111 - 1
- 1
gwas output file misordered
#112 opened by rmcdower - 4
PVE equal to 0 for some significant hits (not all) using mlmm while standard error calculation shows NA for all markers
#110 opened by llama-ops - 1
help with LD.Decay
#109 opened by dardaniacristeli - 1
- 2
some warnings in running GAPIT3
#106 opened by davidzxs123344 - 2
Function to do GAPIT GWAS
#105 opened by HaoWenhy - 1
Phenotypic Distribition- Significant Markers
#104 opened by srad26 - 4
GAPIT.Association.GWAS.results
#100 opened by 9437951970 - 1
Does GAPIT take usual covariate? like sex or other categorical covariate with 0s and 1s?
#101 opened by lzhangUT - 2
Error in implementation of "MLM" and "SUPER" model
#103 opened by 9437951970 - 2
Different Models showing similar results
#99 opened by Waleedkhan1122 - 1
- 4
GWAS, GAPIT version
#97 opened by layliny - 1