jiadong324
Developing algorithms for structure variants detection and variation graphs.
University of WashingtonSeattle
Pinned Repositories
aclust
streaming, flexible agglomerative clustering
BamQC
Mapped QC analysis program
bioconda-recipes
Conda recipes for the bioconda channel.
Canopy
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.
ComparStra-Parser
Scripts used to compare SVs detected from long read and long read assembly
Mako
A graph-based pattern growth approach for CSV discovery
SVisionUtils
SVision help functions
Mako
A graph-based pattern growth approach for CSV discovery
SVision
Detecting genome structural variants with deep learning in single molecule sequencing
jiadong324's Repositories
jiadong324/SVisionUtils
SVision help functions
jiadong324/ComparStra-Parser
Scripts used to compare SVs detected from long read and long read assembly
jiadong324/Mako
A graph-based pattern growth approach for CSV discovery
jiadong324/aclust
streaming, flexible agglomerative clustering
jiadong324/BamQC
Mapped QC analysis program
jiadong324/bioconda-recipes
Conda recipes for the bioconda channel.
jiadong324/Canopy
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.
jiadong324/crossstitch
Code for phasing SVs with SNPs
jiadong324/DeepSimulator
The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
jiadong324/dnaplotlib
DNA plotting library for Python
jiadong324/DWGSIM
Whole Genome Simulator for Next-Generation Sequencing
jiadong324/E-MEM
E-MEM: efficient computation of maximal exact matches for very large genomes
jiadong324/FLAME-Algorithm-FLexible-and-Accurate-Motif-DEtector
Paper: Efficient and Accurate Discovery of Patterns in Sequence Datasets
jiadong324/genomation
R package for genomic feature analysis and visualization
jiadong324/goenrich
GO enrichment with python -- pandas meets networkx
jiadong324/GoogleInterview
some google interview coding questions
jiadong324/gSpan
Python implementation of frequent subgraph mining algorithm gSpan. Directed graphs are supported.
jiadong324/inductive_max_margin
Graph based linear model regularization
jiadong324/JavaGuide
【Java学习+面试指南】 一份涵盖大部分Java程序员所需要掌握的核心知识。
jiadong324/markdown-here
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
jiadong324/MSIfromHE
predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer
jiadong324/ProstateUtils
jiadong324/pybamer
Capture Coverage and Read Length Statistics BAM files
jiadong324/samplot
Plot structural variant signal form a BAM
jiadong324/Scissor
A flexible complex genome rearrangement simulator
jiadong324/svpluscnv
Integrative analysis of complex structural variants
jiadong324/svtyper
Bayesian genotyper for structural variants
jiadong324/wfmash
base-accurate DNA sequence alignments using WFA and mashmap2