Pinned Repositories
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
AngleCAM
D1_D2_scripts
Scripts and other material relevant to estimating the D1 and D2 introgression statistics (see Hibbins & Hahn 2019, Genetics).
gfastats
A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.
ggstatsplot
Enhancing {ggplot2} plots with statistical analysis 📊📣
JaltPhylo
Raw scripts for the Jaltomata phylogenomics project. Publication: Wu, M., Kostyun, J. L., Hahn, M. W., & Moyle, L. C. (2018). Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance. Molecular Ecology, 27, 3301-3316.
OrthoFinder
Phylogenetic orthology inference for comparative genomics
permute
permutation tests and confidence sets
tutorials
Tutorials on phylogenetic and phylogenomic inference
jiangqiuqiuu's Repositories
jiangqiuqiuu/tutorials
Tutorials on phylogenetic and phylogenomic inference
jiangqiuqiuu/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
jiangqiuqiuu/AngleCAM
jiangqiuqiuu/D1_D2_scripts
Scripts and other material relevant to estimating the D1 and D2 introgression statistics (see Hibbins & Hahn 2019, Genetics).
jiangqiuqiuu/gfastats
A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.
jiangqiuqiuu/ggstatsplot
Enhancing {ggplot2} plots with statistical analysis 📊📣
jiangqiuqiuu/JaltPhylo
Raw scripts for the Jaltomata phylogenomics project. Publication: Wu, M., Kostyun, J. L., Hahn, M. W., & Moyle, L. C. (2018). Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance. Molecular Ecology, 27, 3301-3316.
jiangqiuqiuu/OrthoFinder
Phylogenetic orthology inference for comparative genomics
jiangqiuqiuu/permute
permutation tests and confidence sets
jiangqiuqiuu/quast
Genome assembly evaluation tool
jiangqiuqiuu/RCrashCourse_Book
A GitBook version of the R Crash Course self-tutorials: https://colauttilab.github.io/RCrashCourse
jiangqiuqiuu/speciation_scripts
Scripts for analysis used for speciation genomics
jiangqiuqiuu/statistical-rethinking
A repository for working through the Bayesian statistics book "Statistical Rethinking" by Richard McElreath.
jiangqiuqiuu/zelle-python
My solutions to the well know Introduction to Computer Science with Python book by John Zelle. Several years after going through this book, I still recommend it as one of the best examples of computer science pedagogy I've seen to date.