Pinned Repositories
deepTools
Tools to process and analyze deep sequencing data.
CoolBox
Jupyter notebook based genomic data visualization toolkit.
bulk-rnaseq-analysis
A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.
heatmap_for_cooler
math-for-programmers-using-python
spike-in-chip-seq-normalization
Tail-Loss-Primates
cooler
A cool place to store your Hi-C
cooltools
The tools for your .cool's
pairtools
Extract 3D contacts (.pairs) from sequencing alignments
jiangshan529's Repositories
jiangshan529/bulk-rnaseq-analysis
A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.
jiangshan529/heatmap_for_cooler
jiangshan529/math-for-programmers-using-python
jiangshan529/spike-in-chip-seq-normalization
jiangshan529/Tail-Loss-Primates