jianhuupenn/SpaGCN

Error at the steps with louvain algorithm

Closed this issue · 3 comments

avsarg commented

Hi! First of all, thanks for this nice method, SpaGCN. I want to run it for my own data and follow the given tutorial (https://github.com/jianhuupenn/SpaGCN/blob/master/tutorial/tutorial.ipynb). However, I got error which says “BaseException: Could not construct partition: vector too long” at the steps which use Louvain algorithm.

Can you please help me to solve this problem?

Thanks,

avsarg commented

It is solved, thanks.

huimin230 commented

It is solved, thanks.

Hi, I have the similar problem, "BaseException: Could not construct partition: vector", could you please let me know how did you solve this problem?

Big thanks!

avsarg commented

Hi, in my situation, the problem occurred bcz of version mismatch between anndata, scipy, h5py, louvain and so. I just created a new environment which is similar to the tested "Enviroment 3" in Readme file, and the problem solved.