jianhuupenn/SpaGCN
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
PythonMIT
Issues
- 4
No spatial domain detected
#88 opened by sang-15 - 1
SpaGCN not compatible with Visium HD data (single-cell resolution of ST data) - Memory Error
#87 opened by Rafael-Silva-Oliveira - 0
SpaGCN's compatibility with mclust
#86 opened by rocketeer1998 - 1
- 2
spatial location file
#58 opened by YyLu5 - 3
Can't reproduce my results
#77 opened by yunbokai - 7
- 0
- 2
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- 4
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Questions about the pancreatic cancer dataset
#84 opened by czwdcm - 0
- 1
- 0
Please refer to igraph instead of python-igraph
#79 opened by szhorvat - 0
- 0
About modify coordinates
#76 opened by makabakayu - 1
About the extended application of SpaGCN
#75 opened by makabakayu - 1
Variable names are not unique.
#73 opened by Listen-lei - 0
- 6
- 2
problem reproducing turtorial
#65 opened by watergua - 0
- 0
Computation of q_ij
#67 opened by psl-schaefer - 1
location file loss in old ST
#55 opened by xiao-kong-long - 1
when histlogy image is not available, SpaGCN calculating the adjacent matrix showed "segmentation fault""
#46 opened by 20182531027 - 1
Session crash on google colab
#44 opened by shashkat - 0
High memory demands with large samples
#64 opened by vladimirkovacevic - 1
- 2
Example data not available
#62 opened by vladimirkovacevic - 3
Adjacency matrix of DLPFC 151673
#49 opened by xiao-kong-long - 1
- 0
Request for the step to be followed for the multiple samples integration, normalization and clustering in SpaGCN
#57 opened by archanabhardwaj - 0
The SLIDE-seq V2 data
#56 opened by uuup111 - 1
AssertionError
#53 opened by yuchen345 - 2
NotADirectoryError
#48 opened by xiao-kong-long - 2
- 1
- 1
AssertionError
#33 opened by Qirongmao97 - 0
- 3
- 3
Error at the steps with louvain algorithm
#43 opened by avsarg - 1
How to use functions Moran_I and Geary_C ?
#39 opened by QingJun3 - 1
A question about SpaGCN' data
#38 opened by zhaofangyuan98 - 2
- 2
How could I get the ground truth of GSE111672?
#42 opened by amssljc - 1
Student's t bug report
#41 opened by tomo61098 - 2
- 3
Tutorial for imaging-based spatial data
#35 opened by zhanglab2008 - 1
A bug report
#32 opened by tonyyang1995