Pinned Repositories
SSPT
Outdated Secondary Structure Tool using Golang
virussusceptibility
bash_tutorial
Going through a tutorial on bash scripting
batch_pipeline
Example workflows for a multi-step array job on AWS Batch
Can-IQ-be-predicted-from-the-DNA-of-an-individual-
Debate Report
Comparison-of-Salmon-and-Kallisto
This is a course project, in which I had to compare two bioinformatics tools and compare their accuracies and speeds.
Differential-Gene-Expression-Analysis-of-Single-Cell-RNAseq-data
An analysis of head and neck tumour single cell RNA sequencing data from NCBI database
Gene-Expression-Prediction-Using-Deep-Neural-Network
Gene Expression Prediction Using Deep Neural Network employing information about hiddenness of regulatory elements of DNA
Immunostaining-and-TIRF-microscopy
My project report for second UGP under Professor Nitin Mohan (course- BSE399A)
Integration-of-Adrenal-Gland-ATACseq-and-RNAseq
Integration of ATACseq and RNAseq for Adrenal Gland Tissue data from ENCODE
shashkat's Repositories
shashkat/bash_tutorial
Going through a tutorial on bash scripting
shashkat/Immunostaining-and-TIRF-microscopy
My project report for second UGP under Professor Nitin Mohan (course- BSE399A)
shashkat/batch_pipeline
Example workflows for a multi-step array job on AWS Batch
shashkat/Can-IQ-be-predicted-from-the-DNA-of-an-individual-
Debate Report
shashkat/Comparison-of-Salmon-and-Kallisto
This is a course project, in which I had to compare two bioinformatics tools and compare their accuracies and speeds.
shashkat/Differential-Gene-Expression-Analysis-of-Single-Cell-RNAseq-data
An analysis of head and neck tumour single cell RNA sequencing data from NCBI database
shashkat/Gene_Networks_DL_Processor
A Deep Learning model to predict the approximate frequency of the different states of a gene network.
shashkat/github-readme-stats-shashkat
:zap: Dynamically generated stats for your github readmes
shashkat/hello-world
getting used to github
shashkat/Inferring-Evolution-of-Oral-Cancer-In-Patients
Details of my project involving analysis of oral tumour sequencing data and inferences about evolution from it
shashkat/Mosaic-single-cell-data-integration
shashkat/My-Blog
shashkat/Optogenetics-will-make-electrical-stimulation-irrelevant
BSE656A (Neurobiology Course)-Debate Report
shashkat/oralproj_repo
Progress of project on oral cancer data analysis
shashkat/shashkat
Github landing page
shashkat/shashkat.github.io
My Personal website/blog in which I add information about my latest projects
shashkat/UGP--Using-EEG-and-Decision-Making-to-Understand-Stress
This repository contains all the files regarding my 5th semester Undergraduate Project- Using EEG and Decision Making to Understand Stress
shashkat/Understanding-Gene-Network-Motifs-Toggle-Polygons
An in depth analysis of gene networks, initially focusing on a subtype- toggle polygons, then gradually increasing their generalness
shashkat/Gene-Expression-Prediction-Using-Deep-Neural-Network
Gene Expression Prediction Using Deep Neural Network employing information about hiddenness of regulatory elements of DNA
shashkat/Integration-of-Adrenal-Gland-ATACseq-and-RNAseq
Integration of ATACseq and RNAseq for Adrenal Gland Tissue data from ENCODE
shashkat/An-interesting-story-about-cancer
A first attempt blog for my website
shashkat/Gene-Therapy
notes and other details about my project on Gene Therapy with Dr. Byrne
shashkat/gget
š§¬ gget enables efficient querying of genomic reference databases
shashkat/hindi_music_notes_practice
This is a simple tool which one can use to practice musical notes on any instrument (specifically designed for flute). The notes will be displayed in a random order with a time period specified by the user as per their proficiency.
shashkat/libraries
This is where I keep details of my work in the University Libraries
shashkat/Machine-Learning-for-Scientists-Group-Project
Record of our group project for the course Machine Learning for Scientists (02-620), Spring 2024.
shashkat/pybiomart
A simple pythonic interface to biomart.
shashkat/RecitationDemo
Demo for recitation in Programming for Scientist
shashkat/slithbot
Attempt at developing a bot of the slither.io game
shashkat/Understanding-Molecule-Solubility-with-Graph-Neural-Networks
Implementing a Graph Neural Network using Pytorch Geometric and RDKit