yunbokai

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Unix, R and python tools for genomics and data science

-cellrank

CellRank for directed single-cell fate mapping

-pyrovelocity

Probabilistic model of RNA velocity

awesome-single-cell

更新了各种的单细胞处理工具，非常牛批，经常看看他，大佬写的

frp

A fast reverse proxy to help you expose a local server behind a NAT or firewall to the internet.

mistyR

Multiview Intercellular SpaTial modeling framework空间模式探索

scanpy-python

Single-cell analysis in Python. Scales to >1M cells.

single-cell-best-practices-

This project is work in progress! https://www.sc-best-practices.org基于python的单细胞代码

single-cell-tutorial

基于python的单细胞代码流程

SPARK-

Spatially resolved transcriptomic analysis

yunbokai/mistyR

Multiview Intercellular SpaTial modeling framework空间模式探索

yunbokai/scanpy-python

Single-cell analysis in Python. Scales to >1M cells.

yunbokai/single-cell-best-practices-

This project is work in progress! https://www.sc-best-practices.org基于python的单细胞代码

yunbokai/single-cell-tutorial

基于python的单细胞代码流程

yunbokai/SPARK-

Spatially resolved transcriptomic analysis

yunbokai/-cellrank

CellRank for directed single-cell fate mapping

yunbokai/-pyrovelocity

Probabilistic model of RNA velocity

yunbokai/-stLearn

A novel machine learning pipeline to analyse spatial transcriptomics data

yunbokai/awesome-R-R-

A curated list of awesome R packages, frameworks and software.

yunbokai/ccRCC_sn_publication

his github repository contains the data files and analysis code used in "Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma"

yunbokai/cNMF

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

yunbokai/decoupleR-

R package to infer biological activities from omics data using a collection of methods.

yunbokai/get_internet_shengxin_paper

抓取网络文章到github issues保存 很多公众号文章都在这里

yunbokai/Giotto

Spatial omics analysis toolbox

yunbokai/HNSCC-

Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022

yunbokai/Macaca-sn-ana2022-

yunbokai/METArisk-HNSCC-

Codes for METArisk

yunbokai/MFI-nature-

yunbokai/progeny-bulk

R package for Pathway RespOnsive GENe activity inference

yunbokai/RCC-spatial-mapping

Mapping single-cell transcriptomes in the intratumoral and associated territories of kidney cancer文章代码 空间转录组与侵袭前沿；NMF;Nichnet;和cell2loaction

yunbokai/RenalTumor

Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinomaCD文章代码极好

yunbokai/scvelo-

RNA Velocity generalized through dynamical modeling

yunbokai/Seurat.utils-Seurat-

Various utility functions for Seurat single-cell analysis

yunbokai/SpatialDE-

Test genes for Spatial Variation 为python和scanpy设计

yunbokai/SpatialInferCNV

Clone Calling from Visium Spatial Transcriptomics of Cancer samples

yunbokai/stCancer

yunbokai/stImage-

R package for integration analysis of spatial transcriptomics and morphology images可以借鉴代码

yunbokai/TCM-T-pancaner

Codes used in pan-T cell analysis

yunbokai/transcriptutorial-

This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL

yunbokai/yunbokai.github.io

Here is Lab website of Cheng Wang.