Pinned Repositories
SpaGCN
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF
2019 single cell RNA sequencing Workshop @ UCD AND UCSF
AutoBorutaRF
awesome-multi-omics
List of software packages for multi-omics analysis
awesome-network-analysis
A curated list of awesome network analysis resources.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Causal_Microbiome_Tutorial
Causal inference framework for environment-microbiome data applied to American Gut data.
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
user2020-causal-inference
yylu5.github.io
YyLu5's Repositories
YyLu5/awesome-network-analysis
A curated list of awesome network analysis resources.
YyLu5/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
YyLu5/Causal_Microbiome_Tutorial
Causal inference framework for environment-microbiome data applied to American Gut data.
YyLu5/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
YyLu5/yylu5.github.io
YyLu5/biobakery
bioBakery tools for meta'omic profiling
YyLu5/cibookex-r
Causal Inference: What If. R and Stata code for Exercises
YyLu5/classifier
RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
YyLu5/clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
YyLu5/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
YyLu5/deconv_benchmark
YyLu5/DWLS
Gene expression deconvolution using dampened weighted least squares
YyLu5/enar2021-workshop
Workshop materials for "Targeted Learning in the tlverse: Causal Inference Meets Machine Learning" at the 2021 Spring Meeting of the Eastern North American Region (ENAR) of the International Biometric Society
YyLu5/figaro
An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
YyLu5/grf
Generalized Random Forests
YyLu5/Guideline-for-Computational-Biology-and-Bioinformatics
YyLu5/HumanPilot
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
YyLu5/Meta_learner-for-Causal-ML
This repository provides R-code for the estimation of the conditional average treatment effect (CATE) using machine learning (ML) methods.
YyLu5/metamicrobiomeR
An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studies using random effects models
YyLu5/MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
YyLu5/multilevelCF
YyLu5/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
YyLu5/qiime2
Official repository for the QIIME 2 framework.
YyLu5/quant-genetics-webinars
Quantitative Genetics Tools for Mapping Trait Variation to Mechanisms, Therapeutics, and Interventions - Webinar Series
YyLu5/Quickomics
Quickomics: exploring omics data in an intuitive, interactive and informative manner
YyLu5/regmedint
R implementation of %mediation() SAS macro by Valeri & VanderWeele (2013, 2015)
YyLu5/SECRET
YyLu5/SPADE
YyLu5/st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
YyLu5/tidyverse120
玩转数据处理120题—R语言tidyverse版本