/Tutorial-Hades

Materials used for tutorials on HADES

Primary LanguageJavaScript

Tutorial for HADES

This repository contains materials for tutorials on the Health Analytics Data-to-Evidence Suite(HADES), including slides and exercises.

Agenda

Start Topic Duration (minutes)
13:30 General overview of HADES 30
14:00 Practical 1: Installing Hades 30
14:30 Practical 2: Querying the OMOP CDM with OHDSI-SQL 30
15:00 Break (Make sure to download example database) 30
15:30 Creating cohorts with Capr 10
15:40 Practical 3: Create Cohorts using Capr 30
16:10 Strategus overview 10
16:20 Practical 4: Design and run a Strategus study 40

Practicals

You can do the practicals on your own laptop, or else you can create a free account in the Posit Cloud to launch an online version of RStudio here.

Practical 1: Install HADES

Follow these instructions on the HADES website:

  1. How to set up R (Note: if you're using the Posit Cloud you can skip most of this, but you'll still need to configure your GitHub Personal Access Token).
  2. How to install HADES.

Practical 2: Query the CDM using OHDSI-SQL

Complete the exercises here:

  1. Querying the OMOP CDM with OHDSI-SQL

Practical 3: Create cohort definitions using Capr

  1. Building Cohorts with Capr

Practical 4: Design and run a Strategus study

For this you'll need to download the example database. This may take a while, so perhaps best to initiate the download before you take a break.

  1. Designing and running a Strategus study