/compart

GNU General Public License v3.0GPL-3.0

COMPART: Commuicable disease Modeling & Prediction Application for Research and Translation


1. 准备需要的软件：

WLS (Windows subsystem for Linux) git cmake (sudo apt-get install cmake) gcc (sudo apt-get install gcc) python3 (原装或者anaconda) Graphviz (sudo apt-get install graphviz) doxygen (sudo apt-get install doxygen)

2. build covid-sim

git clone https://github.com/mrc-ide/covid-sim cd covid-sim mkdir build cd build cmake .. cmake --build . --target all make test ctest

3. 运行测试用数据:

cd .. ./data/run_sample.py United_Kingdom

4. 获得论文中的报告（非常费时）

export PATH=/mnt/e/Github/covid-sim/build/src/:$PATH # or set up at ~/.bashrc cd ./report9/GB_suppress ./runonce.sh ./batch.sh ./summariseMit.r

Contact & Cite

  • Jie Huang MD MPH PhD, Southern University of Science and Technology
  • Manuscript under review